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Answer: Answer: Michigan imputation server error
23 days ago by Joel Wallenius ▴ 220
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1
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by Joel Wallenius ▴ 220
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by Joel Wallenius ▴ 220
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2.8k
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Comment: Comment: Locating IBD candidates with just VCF files
4 months ago by Joel Wallenius ▴ 220
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703
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Comment: Comment: WES and GBAP1
7 months ago by Joel Wallenius ▴ 220
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1
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703
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Comment: Comment: WES and GBAP1
7 months ago by Joel Wallenius ▴ 220
0
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703
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Comment: Comment: WES and GBAP1
7 months ago by Joel Wallenius ▴ 220
0
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6
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703
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WES and GBAP1
wes homology gba ngs
7 months ago by Joel Wallenius ▴ 220
2
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2
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1.0k
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What are the WES-specific settings when running GATK's variant recalibration step?
WES GATK recalibration exome
updated 10 months ago by 152k • written 2.1 years ago by ▴ 220
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1.7k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
16 months ago by Joel Wallenius ▴ 220
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1.7k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
16 months ago by Joel Wallenius ▴ 220
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1.7k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
16 months ago by Joel Wallenius ▴ 220
2
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6
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1.7k
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What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv genomics variation snp human
16 months ago by Joel Wallenius ▴ 220
5
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11
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2.8k
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Locating IBD candidates with just VCF files
Relatedness Genotypes IBD Haplotypes VCF
4 months ago by Joel Wallenius ▴ 220
3
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1
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2.8k
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Answer: Answer: Locating IBD candidates with just VCF files
16 months ago by Joel Wallenius ▴ 220
0
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1
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841
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GATK's CNV-caller output, genotype code?
GATK CNV NGS
updated 16 months ago by • 0 • written 2.8 years ago by ▴ 220
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3.4k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
21 months ago by Joel Wallenius ▴ 220
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1
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3.4k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
21 months ago by Joel Wallenius ▴ 220
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46k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
21 months ago by Joel Wallenius ▴ 220
0
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1
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46k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
21 months ago by Joel Wallenius ▴ 220
0
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1
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46k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
21 months ago by Joel Wallenius ▴ 220
0
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1
reply
46k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
21 months ago by Joel Wallenius ▴ 220
0
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6.2k
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Comment: Comment: Calculating FPKM and TPM by hand from htseq-count output?
22 months ago by Joel Wallenius ▴ 220
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0
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1.4k
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Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
23 months ago by Joel Wallenius ▴ 220
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1
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1.5k
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Comment: Comment: Parallel GWAS?
24 months ago by Joel Wallenius ▴ 220
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2
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1.5k
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Comment: Comment: Parallel GWAS?
24 months ago by Joel Wallenius ▴ 220
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6
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1.5k
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Parallel GWAS?
GWAS Parallel Chromosome
updated 23 months ago by 12k • written 24 months ago by ▴ 220
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2.0k
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Comment: Comment: How to reconstruct a genome from a contigs file?
24 months ago by Joel Wallenius ▴ 220
2
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1
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2.0k
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Answer: Answer: How to reconstruct a genome from a contigs file?
24 months ago by Joel Wallenius ▴ 220
2
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4
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1.1k
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Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
Mapping Variant-calling masking
updated 2.0 years ago by 152k • written 2.1 years ago by ▴ 220
2
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1
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1.1k
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Answer: Answer: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
2.0 years ago by Joel Wallenius ▴ 220
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1.1k
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Comment: Comment: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
2.1 years ago by Joel Wallenius ▴ 220
2
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1
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1.5k
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Answer: Answer: Retrieving allele-specific information for a variant using VEP annotation
2.1 years ago by Joel Wallenius ▴ 220
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4.4k
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Comment: Comment: samtools collate runs out of temporary storage space: no -T option!
2.1 years ago by Joel Wallenius ▴ 220
0
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1
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2.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.6 years ago by Joel Wallenius ▴ 220
0
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1
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2.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.6 years ago by Joel Wallenius ▴ 220
0
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1
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2.8k
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Comment: Comment: Locating IBD candidates with just VCF files
2.6 years ago by Joel Wallenius ▴ 220
0
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0
replies
577
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A program that detects similar regions between samples in a multi-sample VCF file?
Relatedness IBD Haplotypes
2.6 years ago by Joel Wallenius ▴ 220
0
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0
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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0
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490
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How many SNPs are needed to perform haplotype analysis on siblings and their mother?
haplotype linkage SNP pedigree
2.7 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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0
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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0
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3.7k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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0
replies
3.7k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.7 years ago by Joel Wallenius ▴ 220
0
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2
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.8 years ago by Joel Wallenius ▴ 220
0
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0
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3.7k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.8 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.8 years ago by Joel Wallenius ▴ 220
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