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Comment: C: Trimming adaptors with trimmomatic
5.4 years ago by Hussain Ather ▴ 990
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Answer: A: rna-seq expression analysis among several nonmodel species (Next step?)
6.0 years ago by Hussain Ather ▴ 990
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Comment: A: Convert list of rs IDs from one format to another
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: Generating pileup from .bam file
6.6 years ago by Hussain Ather ▴ 990
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1.9k
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Answer: A: Differential Expression from Quantile-Norm Data
6.6 years ago by Hussain Ather ▴ 990
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4.7k
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Answer: A: Differential ChIP-Seq Analysis
6.6 years ago by Hussain Ather ▴ 990
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5.3k
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Comment: A: How can I convert from bed to bed12 format?
6.6 years ago by Hussain Ather ▴ 990
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2.6k
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Answer: A: How to do correlation analyses between RNAseq and ChIPseq library?
6.6 years ago by Hussain Ather ▴ 990
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1.4k
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Comment: C: Assessing differentially expressed proteins between two samples
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: Using MACS2 for peak calling
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: How to analyze the expression of a single gene in microarray data?
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: [Opinion] - What alignment software do you use?
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: The relationship between DNA sequence divergence and recombination rates?
6.6 years ago by Hussain Ather ▴ 990
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Answer: A: Question: How to generate a count matrix with featurecounts
6.7 years ago by Hussain Ather ▴ 990
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10k
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Answer: A: Is it OK doing Principal component analysis (PCA) analysis just with high varian
6.7 years ago by Hussain Ather ▴ 990
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6.2k
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Comment: A: Should kallisto take hours to run?
6.7 years ago by Hussain Ather ▴ 990
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Answer: A: Is there an available tool to visualize multiple "types" of ChIP-seq peaks on a
6.7 years ago by Hussain Ather ▴ 990
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2
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1.5k
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Comment: A: Algorithms in cwl
6.7 years ago by Hussain Ather ▴ 990
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3.1k
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Answer: A: Cufflinks and StringTie
6.7 years ago by Hussain Ather ▴ 990
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Answer: A: how to determine the gene involved in antibiotic resistance?
6.7 years ago by Hussain Ather ▴ 990
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3.4k
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Comment: A: merge table with gene ID and names
6.7 years ago by Hussain Ather ▴ 990
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2.6k
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Comment: A: IGV - is there a way to extract bulk information?
6.7 years ago by Hussain Ather ▴ 990
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Answer: A: Modern software for whole genome alignment visualization
6.7 years ago by Hussain Ather ▴ 990
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1.5k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
6.8 years ago by Hussain Ather ▴ 990
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3.1k
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Answer: A: opensource grafical user interface for filtering millions of annotated variant
6.8 years ago by Hussain Ather ▴ 990
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Comment: C: need data sets
6.8 years ago by Hussain Ather ▴ 990
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1.6k
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Answer: A: Extracting Indels from two aligned DNA sequences
6.8 years ago by Hussain Ather ▴ 990
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Answer: A: The Most Appropriate Statistical Test
6.8 years ago by Hussain Ather ▴ 990
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3.0k
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Answer: A: Assessing mapping quality from BAM files
6.9 years ago by Hussain Ather ▴ 990
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1
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1.4k
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Answer: A: Machine Learning/Deep Learning approaches to integrate genotype and annotation i
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: Is there a database of proteins and their functional residues?
6.9 years ago by Hussain Ather ▴ 990
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2.4k
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Answer: A: Annotation of taxonomy information in phylogeny tree
6.9 years ago by Hussain Ather ▴ 990
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1.9k
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Answer: A: Quantifying mRNA level
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: Downloading data from HMPDACC.
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: Differential gene expression anaylsis -Ballgown
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: No peaks present in track when opening a .bedGraph file on IGV
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: What shall I do with this RNA-seq data that have no replicates?
6.9 years ago by Hussain Ather ▴ 990
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2.1k
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Answer: A: Issue with DEXSeq installation
6.9 years ago by Hussain Ather ▴ 990
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2.9k
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Answer: A: rpkm and raw count
6.9 years ago by Hussain Ather ▴ 990
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2.4k
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Answer: A: Is anybody know why the StarBase website (http://starbase.sysu.edu.cn/) is not a
6.9 years ago by Hussain Ather ▴ 990
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1.8k
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Comment: A: Bowtie alignment of multiple fastq files
6.9 years ago by Hussain Ather ▴ 990
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5.9k
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Answer: A: Does STAR give the reads that were mapped at intergenic regions? How can I get t
6.9 years ago by Hussain Ather ▴ 990
3
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1.1k
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Answer: A: add same string to the certain lines in python
6.9 years ago by Hussain Ather ▴ 990
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1.6k
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Answer: A: What is my total number of genes in a hypergeometic distribution test?
6.9 years ago by Hussain Ather ▴ 990
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Answer: A: How to detect insertion and deletion errors from BWA
6.9 years ago by Hussain Ather ▴ 990
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1.4k
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Answer: A: Patterns within groups with RNA-seq
6.9 years ago by Hussain Ather ▴ 990
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4.7k
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Answer: A: how can i plot a heatmap in shiny from a user input file
6.9 years ago by Hussain Ather ▴ 990
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1
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3.3k
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Answer: A: Names are not identical in mapping file and the otu file.
6.9 years ago by Hussain Ather ▴ 990
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1.6k
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Answer: A: Plant genes interaction pathway tool
6.9 years ago by Hussain Ather ▴ 990
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3
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1.5k
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Which is more useful - Seaborn or Matplotlib?
matplotlib seaborn python
updated 6.9 years ago by ▴ 380 • written 6.9 years ago by ▴ 990
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