Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
365
views
Comment: Comment: Is ComBat not able to to handle only two batches? What are good alternatives?
3 months ago by samuelandjw ▴ 260
2
votes
3
replies
365
views
Is ComBat not able to to handle only two batches? What are good alternatives?
ComBat batch correction
3 months ago by samuelandjw ▴ 260
0
votes
0
replies
397
views
Finding a list of heritable traits using GCTA
complex heritability traits GCTA
2.4 years ago by samuelandjw ▴ 260
2
votes
1
reply
632
views
Should we include genotype as covariates when performing EWAS?
methylation EWAS DNA
updated 23 months ago by 44k • written 2.5 years ago by ▴ 260
2
votes
1
reply
569
views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation EWAS DNA
updated 23 months ago by 44k • written 2.5 years ago by ▴ 260
4
votes
1
reply
549
views
Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome whole sequencing
updated 2.5 years ago by 164k • written 2.5 years ago by ▴ 260
0
votes
0
replies
482
views
How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated 2.5 years ago by 44k • written 2.5 years ago by ▴ 260
0
votes
1
reply
906
views
Comment: Comment: How to access the NCBI Molecular QTL Browser?
2.6 years ago by samuelandjw ▴ 260
1
vote
3
replies
906
views
How to access the NCBI Molecular QTL Browser?
QTL
updated 2.6 years ago by 147k • written 2.6 years ago by ▴ 260
0
votes
0
replies
8.4k
views
Comment: Comment: Any FastQC alternative
2.6 years ago by samuelandjw ▴ 260
0
votes
0
replies
345
views
How to group EWAS traits like GWAS catalog does?
GWAS EWAS
2.6 years ago by samuelandjw ▴ 260
3
votes
1
reply
663
views
reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation DNA
updated 2.8 years ago by ★ 3.0k • written 2.8 years ago by ▴ 260
0
votes
0
replies
1.1k
views
Answer: Answer: Unable to install dplyr on Fedora 35
2.8 years ago by samuelandjw ▴ 260
1
vote
1
reply
620
views
EWAS: should DNA methylation level be the independent variable or dependent variable?
DNA EWAS methylation
updated 2.2 years ago by • 0 • written 2.9 years ago by ▴ 260
0
votes
0
replies
1.7k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
3.0 years ago by samuelandjw ▴ 260
1
vote
1
reply
656
views
Should we trust genotypes called in simple tandem repeat regions?
sequencing GATK WGS WES
updated 3.0 years ago by 101k • written 3.0 years ago by ▴ 260
0
votes
0
replies
751
views
Comment: Comment: What is the largest freely available dataset of WGS samples?
3.1 years ago by samuelandjw ▴ 260
3
votes
0
replies
583
views
GATK site filtering: when should I use VQSR or hard filtering?
VQSR GATK
3.1 years ago by samuelandjw ▴ 260
1
vote
0
replies
2.0k
views
Answer: Answer: How to subset vcf by sample and write?
3.3 years ago by samuelandjw ▴ 260
1
vote
0
replies
803
views
Comment: Comment: GATK VQSR for human WGS
3.3 years ago by samuelandjw ▴ 260
0
votes
0
replies
2.3k
views
Comment: Comment: Error in plot-vcfstats
3.3 years ago by samuelandjw ▴ 260
2
votes
0
replies
1.7k
views
Comment: Comment: Using vcftools and got Error: Unknown option: --max-missing
3.3 years ago by samuelandjw ▴ 260
0
votes
1
reply
7.0k
views
Comment: Comment: plot-vcfstats
3.3 years ago by samuelandjw ▴ 260
2
votes
1
reply
7.0k
views
Answer: Answer: plot-vcfstats
3.3 years ago by samuelandjw ▴ 260
0
votes
0
replies
1.7k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
3.3 years ago by samuelandjw ▴ 260
0
votes
4
replies
1.7k
views
Best practice for running GATK VQSR on X chromosome
WGS GATK WES
3.0 years ago by samuelandjw ▴ 260
0
votes
1
reply
2.9k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
3.3 years ago by samuelandjw ▴ 260
1
vote
0
replies
2.9k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
3.3 years ago by samuelandjw ▴ 260
11
votes
13
replies
2.9k
views
Why is WGS/WES depth of Y chromosome highly variable?
chromosome-Y whole-genome-sequencing
updated 23 months ago by 44k • written 3.3 years ago by ▴ 260
0
votes
1
reply
2.9k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
3.3 years ago by samuelandjw ▴ 260
0
votes
0
replies
7.1k
views
Comment: Comment: GATK genomicsDBimport intervals for WGS
3.4 years ago by samuelandjw ▴ 260
1
vote
0
replies
3.4k
views
Comment: Comment: Why is VCFtools excluding invariable sites?
3.6 years ago by samuelandjw ▴ 260
0
votes
0
replies
6.9k
views
Comment: Comment: plotting PCA PLINK eigenvec output in R
3.6 years ago by samuelandjw ▴ 260
3
votes
1
reply
6.9k
views
Answer: Answer: plotting PCA PLINK eigenvec output in R
3.6 years ago by samuelandjw ▴ 260
0
votes
0
replies
699
views
Convert spanning deletions called by GATK back to regular indels
GATK sequencing
4.1 years ago by samuelandjw ▴ 260
0
votes
0
replies
2.2k
views
Answer: A: How do I plot RFMix results?
4.1 years ago by samuelandjw ▴ 260
0
votes
0
replies
9.4k
views
Comment: C: bwa mem hard clipping
5.0 years ago by samuelandjw ▴ 260
0
votes
0
replies
24k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
5.0 years ago by samuelandjw ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: meaning of Q_bias ADMIXTURE bootstrap
5.2 years ago by samuelandjw ▴ 260
1
vote
2
replies
1.9k
views
meaning of Q_bias ADMIXTURE bootstrap
admixture population ancestry
updated 5.2 years ago by • 0 • written 5.8 years ago by ▴ 260
0
votes
1
reply
1.1k
views
refine population phased haplotypes by pedigree
phasing genotype pedigree population
updated 5.3 years ago by • 0 • written 5.7 years ago by ▴ 260
4
votes
0
replies
1.9k
views
Answer: A: ADMIXTURE haploid mode does not converge
5.7 years ago by samuelandjw ▴ 260
4
votes
1
reply
1.9k
views
ADMIXTURE haploid mode does not converge
admixture population
updated 23 months ago by 44k • written 5.7 years ago by ▴ 260
43 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6