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403
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Expand the dna sequence downstreama and upstream of the sequence for motif analysis
Exon RNA-Seq DEXSeq Motif
2.1 years ago by osiemen ▴ 30
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1.0k
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Comment: Comment: Use biomart getSequence to obtain cDNA sequence based on exon coordinates obtain
2.1 years ago by osiemen ▴ 30
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2
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1.0k
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Use biomart getSequence to obtain cDNA sequence based on exon coordinates obtained from DEXSeq
Biomart Exon RNA-Seq DEXSeq
updated 2.1 years ago by ★ 1.8k • written 2.1 years ago by ▴ 30
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2.3k
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Comment: Comment: Mapping DEXseq exons back to genomic DNA sequences
2.1 years ago by osiemen ▴ 30
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377
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Identification of tissue-specific exons using DEXSeq
DEXSeq Exon RNA-Seq Expression Count
2.2 years ago by osiemen ▴ 30
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1.6k
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Comment: Comment: Executing a python script parallel for mutiple files in directory
2.3 years ago by osiemen ▴ 30
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1.6k
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Comment: Comment: Executing a python script parallel for mutiple files in directory
2.3 years ago by osiemen ▴ 30
1
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7
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1.6k
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Executing a python script parallel for mutiple files in directory
DEXSeq RNA-Seq bash parallel
updated 2.3 years ago by 3.2k • written 2.3 years ago by ▴ 30
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1
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1.1k
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Comment: Comment: Collecting samples from different studies for RNASeq analysis.
2.3 years ago by osiemen ▴ 30
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1
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1.1k
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Comment: Comment: Collecting samples from different studies for RNASeq analysis.
2.3 years ago by osiemen ▴ 30
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3
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1.2k
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Merging 2 SRR runs of the same sample?
SRA Sample RNA-Seq SRX SRR
updated 2.3 years ago by 85k • written 2.3 years ago by ▴ 30
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0
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1.2k
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Comment: Comment: Merging 2 SRR runs of the same sample?
2.3 years ago by osiemen ▴ 30
1
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5
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1.1k
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Collecting samples from different studies for RNASeq analysis.
Mouse-data Brain Retina RNA-Seq Sample-collection
updated 2.3 years ago by 20k • written 2.3 years ago by ▴ 30
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1.4k
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Comment: Comment: DEXSeq Error loading in data set - subscript out of bound
2.3 years ago by osiemen ▴ 30
3
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4
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1.4k
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DEXSeq Error loading in data set - subscript out of bound
DEXSeq Exon RNA-Seq Expression Count
updated 24 months ago by • 0 • written 2.3 years ago by ▴ 30
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1.4k
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Comment: Comment: DEXSeq Error loading in data set - subscript out of bound
2.3 years ago by osiemen ▴ 30
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0
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by osiemen ▴ 30
0
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1
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by osiemen ▴ 30
0
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1
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by osiemen ▴ 30
6
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9
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1.9k
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DEXSeq - No Exon Counts
DEXSeq Exon RNA-Seq Expression Count
2.3 years ago by osiemen ▴ 30
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0
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by osiemen ▴ 30
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0
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1.2k
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Comment: C: Reasons for switching from Affymetrix HGU133Plus 2.0 array platform to HGU133Plu
6.7 years ago by osiemen ▴ 30
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2
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1.2k
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Reasons for switching from Affymetrix HGU133Plus 2.0 array platform to HGU133Plus+PM
micro-array genome Affymetrix
6.7 years ago by osiemen ▴ 30
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0
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1.1k
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Answer: A: how to make "custom" affy batch vector (affymetrix plus2)
6.8 years ago by osiemen ▴ 30
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1
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1.1k
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how to make "custom" affy batch vector (affymetrix plus2)
R software error
6.8 years ago by osiemen ▴ 30
0
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1
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2.1k
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Getting information about samples(.CEL files) from GEO using R
micro-array R
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 30
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1
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4.0k
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Comment: C: Downloading multiple samples with GEO accesion numbers
6.8 years ago by osiemen ▴ 30
2
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11
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4.0k
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Downloading multiple samples with GEO accesion numbers
microarray GEO
6.8 years ago by osiemen ▴ 30
1
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2
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4.0k
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Answer: A: Downloading multiple samples with GEO accesion numbers
6.8 years ago by osiemen ▴ 30
0
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1
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4.0k
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Comment: C: Downloading multiple samples with GEO accesion numbers
6.8 years ago by osiemen ▴ 30
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2
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4.0k
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Comment: C: Downloading multiple samples with GEO accesion numbers
6.8 years ago by osiemen ▴ 30
0
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0
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3.9k
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Comment: C: Average size and amount of Enhancer and Promoters ?
7.0 years ago by osiemen ▴ 30
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0
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3.9k
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Comment: C: Average size and amount of Enhancer and Promoters ?
7.0 years ago by osiemen ▴ 30
4
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7
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3.9k
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Average size and amount of Enhancer and Promoters ?
genome DNA
updated 7.0 years ago by ★ 4.0k • written 7.0 years ago by ▴ 30
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2
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2.0k
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Bed tools for comparing files and calculating the percentage of different parts
bed bedtools percentage
7.0 years ago by osiemen ▴ 30
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0
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2.0k
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Comment: A: Bed tools for comparing files and calculating the percentage of different parts
7.0 years ago by osiemen ▴ 30
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0
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2.1k
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Comment: C: Which Enhancer regulates which gene
7.0 years ago by osiemen ▴ 30
2
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2
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2.1k
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Which Enhancer regulates which gene
next-gen SNP TAD Enhancer gene
updated 7.0 years ago by ★ 2.1k • written 7.0 years ago by ▴ 30
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0
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2.1k
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Comment: C: Known databases for pathogenic SNV's in the non coding regions
7.1 years ago by osiemen ▴ 30
0
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0
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2.1k
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Comment: C: Known databases for pathogenic SNV's in the non coding regions
7.1 years ago by osiemen ▴ 30
2
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3
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2.1k
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Known databases for pathogenic SNV's in the non coding regions
next-gen genome snp
7.1 years ago by osiemen ▴ 30
0
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1
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11k
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Comment: C: TAD (Topologically Associating Domain) boundaries
7.1 years ago by osiemen ▴ 30
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1
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11k
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Comment: C: TAD (Topologically Associating Domain) boundaries
7.1 years ago by osiemen ▴ 30
0
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1
reply
11k
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Comment: C: TAD (Topologically Associating Domain) boundaries
7.1 years ago by osiemen ▴ 30
0
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0
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11k
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Comment: A: TAD (Topologically Associating Domain) boundaries
7.1 years ago by osiemen ▴ 30
45 results • Page 1 of 1
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