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Comment: Comment: Bamcoverage unique mapping reads
4.1 years ago by tim.ivanov.92 ▴ 40
0
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0
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2.6k
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Comment: C: Custom substitution matrix in biopython pairwise2 aligner
5.2 years ago by tim.ivanov.92 ▴ 40
4
votes
2
replies
2.6k
views
Custom substitution matrix in biopython pairwise2 aligner
Biopython pairwise2 alignment
updated 5.2 years ago by ▴ 100 • written 5.2 years ago by ▴ 40
5
votes
11
replies
4.8k
views
Retrieve genome in fasta format from ncbi
biopython genome ncbi
updated 6.0 years ago by ▴ 10 • written 6.8 years ago by ▴ 40
0
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0
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2.2k
views
Comment: C: Exonerate raw score to percent identity
6.1 years ago by tim.ivanov.92 ▴ 40
2
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2
replies
2.2k
views
Exonerate raw score to percent identity
exonerate SmithWaterman alignment
updated 6.1 years ago by ★ 3.3k • written 6.1 years ago by ▴ 40
0
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0
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2.2k
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Comment: C: Protein coding annotation from UCSC
6.1 years ago by tim.ivanov.92 ▴ 40
2
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5
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2.2k
views
Protein coding annotation from UCSC
ucsc annotation
updated 6.1 years ago by ▴ 670 • written 6.1 years ago by ▴ 40
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0
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2.2k
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Comment: C: Protein coding annotation from UCSC
6.1 years ago by tim.ivanov.92 ▴ 40
0
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0
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1.4k
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Comment: C: Annotating multiple sequence alignment
6.4 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
1.4k
views
Comment: C: Annotating multiple sequence alignment
6.4 years ago by tim.ivanov.92 ▴ 40
1
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4
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1.4k
views
Annotating multiple sequence alignment
TEXshade MAF alignment
updated 6.4 years ago by 10k • written 6.4 years ago by ▴ 40
0
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0
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5.3k
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Comment: C: Convert MAF to FASTA
6.5 years ago by tim.ivanov.92 ▴ 40
0
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0
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5.3k
views
Comment: C: Convert MAF to FASTA
6.5 years ago by tim.ivanov.92 ▴ 40
1
vote
4
replies
5.3k
views
Convert MAF to FASTA
alignment soft ucsc
updated 6.5 years ago by ★ 1.1k • written 6.5 years ago by ▴ 40
1
vote
0
replies
5.2k
views
Answer: A: MAF format help
6.6 years ago by tim.ivanov.92 ▴ 40
4
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9
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5.2k
views
MAF format help
ucsc mafFrags
6.6 years ago by tim.ivanov.92 ▴ 40
0
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0
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5.2k
views
Comment: C: MAF format help
6.6 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
5.2k
views
Comment: C: MAF format help
6.6 years ago by tim.ivanov.92 ▴ 40
2
votes
5
replies
1.8k
views
Can i use ucsc track browser without a reference organism?
ucsc aln clustalw annotation
updated 6.6 years ago by 20 • written 6.7 years ago by ▴ 40
0
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0
replies
888
views
IGV browser for mafFrag output
IGV mafFrag MAF
6.6 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
5.2k
views
Comment: A: MAF format help
6.6 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
5.2k
views
Comment: C: MAF format help
6.6 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
2.2k
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Comment: C: SRA archive metadata
6.6 years ago by tim.ivanov.92 ▴ 40
1
vote
3
replies
2.2k
views
SRA archive metadata
SRA sra-toolkit ncbi
updated 6.6 years ago by ★ 3.8k • written 6.6 years ago by ▴ 40
0
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0
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4.3k
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Comment: C: Get gene counts from *.sam file and annotation
6.7 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
4.3k
views
Comment: C: Get gene counts from *.sam file and annotation
6.7 years ago by tim.ivanov.92 ▴ 40
2
votes
5
replies
4.3k
views
Get gene counts from *.sam file and annotation
RNA-Seq alignment samtools
6.7 years ago by tim.ivanov.92 ▴ 40
0
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0
replies
1.2k
views
Comment: C: *.sra files info
6.7 years ago by tim.ivanov.92 ▴ 40
0
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2
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1.2k
views
Comment: C: *.sra files info
6.7 years ago by tim.ivanov.92 ▴ 40
2
votes
5
replies
1.2k
views
*.sra files info
SRAToolkit next-gen
updated 24 months ago by 45k • written 6.7 years ago by ▴ 40
0
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0
replies
1.1k
views
Software for genome coordinates from alignment
genome alignment gene
updated 6.7 years ago by 20 • written 6.9 years ago by ▴ 40
0
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0
replies
1.8k
views
Comment: C: Can i use ucsc track browser without a reference organism?
6.7 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
1.8k
views
Comment: C: Can i use ucsc track browser without a reference organism?
6.7 years ago by tim.ivanov.92 ▴ 40
0
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1
reply
2.0k
views
Comment: C: Strand not working in biopython efetch
6.7 years ago by tim.ivanov.92 ▴ 40
2
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3
replies
2.0k
views
Strand not working in biopython efetch
biopython efetch strand
updated 6.7 years ago by 22k • written 6.7 years ago by ▴ 40
0
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1
reply
3.8k
views
Comment: C: Extract genbank features inside a given range
6.8 years ago by tim.ivanov.92 ▴ 40
0
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0
replies
1.4k
views
Adding annotation tracks for multiple alignment
visualization MAF multiple-alignment annotation
updated 2.1 years ago by 45k • written 6.8 years ago by ▴ 40
0
votes
3
replies
3.8k
views
Extract genbank features inside a given range
biopython genbank
updated 6.8 years ago by 22k • written 6.8 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Target sequence from exonerate output
biopython exonerate
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
1
reply
4.8k
views
Comment: C: Retrieve genome in fasta format from ncbi
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
4.8k
views
Comment: C: Retrieve genome in fasta format from ncbi
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
1
reply
4.8k
views
Comment: C: Retrieve genome in fasta format from ncbi
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
2
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4.8k
views
Comment: C: Retrieve genome in fasta format from ncbi
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
3.5k
views
Comment: C: How to specify organism taxa in biopythons remote blast cmd?
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
1.2k
views
Comment: C: Genome sequence from protein
6.8 years ago by tim.ivanov.92 ▴ 40
1
vote
2
replies
3.5k
views
How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
2
replies
1.2k
views
Genome sequence from protein
sequence alignment genome
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
2.6k
views
Comment: C: Getting genomic regions by local coordinates (protein/transcript)
6.8 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
2.6k
views
Comment: C: Getting genomic regions by local coordinates (protein/transcript)
6.8 years ago by tim.ivanov.92 ▴ 40
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