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Liftedover vcf header/contig compatibility
crossmap vcf bcftools liftover contig
updated 21 months ago by ▴ 630 • written 21 months ago by ▴ 90
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2.0k
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Comment: Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
21 months ago by LayneSadler ▴ 90
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0
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18k
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Comment: Comment: Mapping Ensembl Gene IDs with dot suffix
21 months ago by LayneSadler ▴ 90
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0
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25k
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Answer: Answer: Convert Ensembl Transcript Ids Ensmust To Gene Symbol Using Mygene Module In Pyt
21 months ago by LayneSadler ▴ 90
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0
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2.5k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
21 months ago by LayneSadler ▴ 90
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1
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2.5k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
21 months ago by LayneSadler ▴ 90
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1
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2.5k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
22 months ago by LayneSadler ▴ 90
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3.7k
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Comment: Comment: STAR-Fusion: Problem in interpreting
22 months ago by LayneSadler ▴ 90
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5.4k
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Comment: Comment: Must paired-end reads be in the same order in the two files for input to Tophat?
22 months ago by LayneSadler ▴ 90
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0
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37k
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Comment: Comment: Sjdboverhang Option In Star
22 months ago by LayneSadler ▴ 90
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1
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2.7k
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Comment: Comment: bbsplit running slow or out of memory?
22 months ago by LayneSadler ▴ 90
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1
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2.7k
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Answer: Answer: bbsplit running slow or out of memory?
7 months ago by LayneSadler ▴ 90
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42k
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Comment: Comment: How to know that your RNA-seq is stranded or not?
22 months ago by LayneSadler ▴ 90
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42k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
22 months ago by LayneSadler ▴ 90
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8.5k
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Comment: Comment: bbmap split paired-end reads back into separated fastq files?
22 months ago by LayneSadler ▴ 90
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1
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16k
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
22 months ago by LayneSadler ▴ 90
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3
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1.3k
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Removing overrepresented sequences in paired end RNA-seq
cutadapt rna-seq trimgalore
updated 22 months ago by 45k • written 22 months ago by ▴ 90
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1.3k
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Answer: Answer: Removing overrepresented sequences in paired end RNA-seq
22 months ago by LayneSadler ▴ 90
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0
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1.3k
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Comment: Comment: Removing overrepresented sequences in paired end RNA-seq
22 months ago by LayneSadler ▴ 90
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0
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12k
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Comment: Comment: removing overrepresented sequences from rna-seq
22 months ago by LayneSadler ▴ 90
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0
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35k
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Answer: Answer: FastQC command line usage
22 months ago by LayneSadler ▴ 90
2
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1
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739
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Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna ncRNA transcriptome pseudogene rna-seq
updated 23 months ago by 13k • written 23 months ago by ▴ 90
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0
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2.7k
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Comment: Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
23 months ago by LayneSadler ▴ 90
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1
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82k
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Comment: Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
23 months ago by LayneSadler ▴ 90
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1
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5.6k
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Answer: Answer: VEP output has no gene names
23 months ago by LayneSadler ▴ 90
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7
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2.7k
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Why are some WES VCFs larger than others?
WES sequencing genomics NGS exome
23 months ago by LayneSadler ▴ 90
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0
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48k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
23 months ago by LayneSadler ▴ 90
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0
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48k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
23 months ago by LayneSadler ▴ 90
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0
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2.7k
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Comment: Comment: Why are some WES files larger than others?
23 months ago by LayneSadler ▴ 90
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2
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2.7k
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Answer: Answer: Why are some WES VCFs larger than others?
23 months ago by LayneSadler ▴ 90
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0
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2.7k
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Comment: Comment: Why are some WES files larger than others?
23 months ago by LayneSadler ▴ 90
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0
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34k
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Answer: Answer: Rna-Seq Pipeline
24 months ago by LayneSadler ▴ 90
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0
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1.9k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.1 years ago by LayneSadler ▴ 90
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0
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1.9k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.1 years ago by LayneSadler ▴ 90
0
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3
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1.1k
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How many basepairs are genes padded by in WES?
NGS sequencing WES exome
updated 2.2 years ago by ▴ 290 • written 2.2 years ago by ▴ 90
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1
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1.1k
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Comment: Comment: How many basepairs are genes padded by in WES?
2.2 years ago by LayneSadler ▴ 90
0
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1
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21k
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Comment: Comment: Apple M1 processor for bioinformactics
2.4 years ago by LayneSadler ▴ 90
3
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4
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1.4k
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Annotate list of Ensembl genes
gene functional-annotation
updated 2.6 years ago by ▴ 450 • written 2.7 years ago by ▴ 90
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0
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2.8k
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Comment: Comment: VEP outputs the similar INFO CSQ data multiple times
2.6 years ago by LayneSadler ▴ 90
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0
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37k
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Comment: Comment: Snp Quality In Vcf File
2.6 years ago by LayneSadler ▴ 90
0
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0
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14k
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Comment: Comment: Illumina cpg probe ID conversion to chromosomal location?
2.6 years ago by LayneSadler ▴ 90
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0
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816
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Comment: Comment: Do LoF/GoF count toward transcript count?
2.6 years ago by LayneSadler ▴ 90
2
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2
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816
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Do LoF/GoF count toward transcript count?
expression rna-seq rna
2.6 years ago by LayneSadler ▴ 90
0
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0
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6.2k
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Comment: Comment: problem in EnsemblID to gene symbol conversion in TCGA data
2.6 years ago by LayneSadler ▴ 90
0
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1
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1.4k
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Comment: Comment: Annotate list of Ensembl genes
2.7 years ago by LayneSadler ▴ 90
0
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0
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1.4k
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Comment: Comment: TCGA - Is vital_status subject to follow_up duration?
2.7 years ago by LayneSadler ▴ 90
1
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2
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1.4k
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TCGA - Is vital_status subject to follow_up duration?
phenotype cohort prognostic survival tcga
2.7 years ago by LayneSadler ▴ 90
0
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0
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1.9k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.7 years ago by LayneSadler ▴ 90
2
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8
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1.9k
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If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA miRNA sequencing RNA-seq
2.1 years ago by LayneSadler ▴ 90
0
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1
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1.9k
views
Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.7 years ago by LayneSadler ▴ 90
88 results • Page 1 of 2
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