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Liftedover vcf header/contig compatibility
crossmap vcf bcftools liftover contig
updated 16 months ago by ▴ 570 • written 16 months ago by ▴ 90
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1.7k
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Comment: Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
16 months ago by LayneSadler ▴ 90
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17k
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Comment: Comment: Mapping Ensembl Gene IDs with dot suffix
16 months ago by LayneSadler ▴ 90
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0
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24k
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Answer: Answer: Convert Ensembl Transcript Ids Ensmust To Gene Symbol Using Mygene Module In Pyt
16 months ago by LayneSadler ▴ 90
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0
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2.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
16 months ago by LayneSadler ▴ 90
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1
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2.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
16 months ago by LayneSadler ▴ 90
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1
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2.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
16 months ago by LayneSadler ▴ 90
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3.4k
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Comment: Comment: STAR-Fusion: Problem in interpreting
16 months ago by LayneSadler ▴ 90
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5.1k
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Comment: Comment: Must paired-end reads be in the same order in the two files for input to Tophat?
16 months ago by LayneSadler ▴ 90
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0
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35k
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Comment: Comment: Sjdboverhang Option In Star
16 months ago by LayneSadler ▴ 90
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1
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2.3k
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Comment: Comment: bbsplit running slow or out of memory?
16 months ago by LayneSadler ▴ 90
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1
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2.3k
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Answer: Answer: bbsplit running slow or out of memory?
11 weeks ago by LayneSadler ▴ 90
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0
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40k
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Comment: Comment: How to know that your RNA-seq is stranded or not?
16 months ago by LayneSadler ▴ 90
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40k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
16 months ago by LayneSadler ▴ 90
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7.8k
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Comment: Comment: bbmap split paired-end reads back into separated fastq files?
16 months ago by LayneSadler ▴ 90
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0
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15k
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
16 months ago by LayneSadler ▴ 90
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3
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1.0k
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Removing overrepresented sequences in paired end RNA-seq
cutadapt rna-seq trimgalore
updated 16 months ago by 44k • written 16 months ago by ▴ 90
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1.0k
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Answer: Answer: Removing overrepresented sequences in paired end RNA-seq
16 months ago by LayneSadler ▴ 90
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0
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1.0k
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Comment: Comment: Removing overrepresented sequences in paired end RNA-seq
16 months ago by LayneSadler ▴ 90
0
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0
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10k
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Comment: Comment: removing overrepresented sequences from rna-seq
16 months ago by LayneSadler ▴ 90
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0
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29k
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Answer: Answer: FastQC command line usage
17 months ago by LayneSadler ▴ 90
2
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1
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597
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Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna ncRNA transcriptome pseudogene rna-seq
updated 17 months ago by 13k • written 17 months ago by ▴ 90
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0
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2.4k
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Comment: Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
17 months ago by LayneSadler ▴ 90
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1
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74k
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Comment: Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
17 months ago by LayneSadler ▴ 90
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1
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5.0k
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Answer: Answer: VEP output has no gene names
18 months ago by LayneSadler ▴ 90
0
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7
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2.1k
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Why are some WES VCFs larger than others?
WES sequencing genomics NGS exome
17 months ago by LayneSadler ▴ 90
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0
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46k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
18 months ago by LayneSadler ▴ 90
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0
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46k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
18 months ago by LayneSadler ▴ 90
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0
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2.1k
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Comment: Comment: Why are some WES files larger than others?
18 months ago by LayneSadler ▴ 90
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2
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2.1k
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Answer: Answer: Why are some WES VCFs larger than others?
17 months ago by LayneSadler ▴ 90
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0
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2.1k
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Comment: Comment: Why are some WES files larger than others?
18 months ago by LayneSadler ▴ 90
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0
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34k
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Answer: Answer: Rna-Seq Pipeline
18 months ago by LayneSadler ▴ 90
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0
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1.6k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
20 months ago by LayneSadler ▴ 90
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0
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1.6k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
20 months ago by LayneSadler ▴ 90
0
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3
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869
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How many basepairs are genes padded by in WES?
NGS sequencing WES exome
updated 21 months ago by ▴ 280 • written 21 months ago by ▴ 90
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1
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869
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Comment: Comment: How many basepairs are genes padded by in WES?
21 months ago by LayneSadler ▴ 90
0
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1
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20k
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Comment: Comment: Apple M1 processor for bioinformactics
2.0 years ago by LayneSadler ▴ 90
3
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4
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1.2k
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Annotate list of Ensembl genes
gene functional-annotation
updated 2.1 years ago by ▴ 450 • written 2.2 years ago by ▴ 90
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0
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2.4k
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Comment: Comment: VEP outputs the similar INFO CSQ data multiple times
2.2 years ago by LayneSadler ▴ 90
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0
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36k
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Comment: Comment: Snp Quality In Vcf File
2.2 years ago by LayneSadler ▴ 90
0
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0
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13k
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Comment: Comment: Illumina cpg probe ID conversion to chromosomal location?
2.2 years ago by LayneSadler ▴ 90
0
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0
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683
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Comment: Comment: Do LoF/GoF count toward transcript count?
2.2 years ago by LayneSadler ▴ 90
2
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2
replies
683
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Do LoF/GoF count toward transcript count?
expression rna-seq rna
2.2 years ago by LayneSadler ▴ 90
0
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0
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5.6k
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Comment: Comment: problem in EnsemblID to gene symbol conversion in TCGA data
2.2 years ago by LayneSadler ▴ 90
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1
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1.2k
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Comment: Comment: Annotate list of Ensembl genes
2.2 years ago by LayneSadler ▴ 90
0
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0
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1.1k
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Comment: Comment: TCGA - Is vital_status subject to follow_up duration?
2.3 years ago by LayneSadler ▴ 90
1
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2
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1.1k
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TCGA - Is vital_status subject to follow_up duration?
phenotype cohort prognostic survival tcga
2.3 years ago by LayneSadler ▴ 90
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0
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1.6k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.3 years ago by LayneSadler ▴ 90
2
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8
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1.6k
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If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA miRNA sequencing RNA-seq
20 months ago by LayneSadler ▴ 90
0
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1
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1.6k
views
Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.3 years ago by LayneSadler ▴ 90
88 results • Page 1 of 2
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