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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.3 years ago by LayneSadler ▴ 90
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1
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1.4k
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Comment: Comment: Gene types to use for RNA counts case-control
2.3 years ago by LayneSadler ▴ 90
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1
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1.4k
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Comment: Comment: Gene types to use for RNA counts case-control
2.3 years ago by LayneSadler ▴ 90
2
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7
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1.4k
views
Gene types to use for RNA counts case-control
rna rnaseq tpm
updated 2.3 years ago by 20k • written 2.3 years ago by ▴ 90
0
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2
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2.8k
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Comment: Comment: Why isn't GWAS used in oncology?
2.3 years ago by LayneSadler ▴ 90
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2.8k
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Comment: Comment: Why isn't GWAS used in oncology?
2.3 years ago by LayneSadler ▴ 90
7
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14
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2.8k
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7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 2.3 years ago by 4.5k • written 2.3 years ago by ▴ 90
0
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2.8k
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Comment: Comment: Why isn't GWAS used in oncology?
2.3 years ago by LayneSadler ▴ 90
0
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1
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1.2k
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Comment: Comment: Reference counts for RNA-seq
2.3 years ago by LayneSadler ▴ 90
4
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5
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1.2k
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Reference counts for RNA-seq
expression rna rna-seq tpm transcripts
updated 2.3 years ago by 85k • written 2.3 years ago by ▴ 90
0
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1
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991
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Comment: Comment: What are GL*.* values in chr column of rna seq counts?
2.3 years ago by LayneSadler ▴ 90
3
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3
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991
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What are GL*.* values in chr column of rna seq counts?
reference sequencing rna-seq rna
updated 2.3 years ago by 147k • written 2.3 years ago by ▴ 90
0
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0
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22k
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Comment: Comment: Differences between FPKM and FPKM-UQ files in gene expression analysis
2.4 years ago by LayneSadler ▴ 90
0
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0
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544
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Tool: AIQC - open source framework making deep learning accessible for researchers.
statistics machine multi-omic learning ai
2.9 years ago by LayneSadler ▴ 90
8
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4
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1.2k
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Are small insertions always single-stranded?
indel
updated 4.0 years ago by 20 • written 5.4 years ago by ▴ 90
1
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0
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1.0k
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How do BOLT and SAIGE calculate LD?... with PLINK LD?
plink bolt saige gwas
4.9 years ago by LayneSadler ▴ 90
0
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0
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780
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Comment: C: Noncoding annotations for WGS?
4.9 years ago by LayneSadler ▴ 90
0
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2
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780
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Noncoding annotations for WGS?
noncoding intron annotation
4.9 years ago by LayneSadler ▴ 90
6
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5
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2.1k
views
VCF - does mother or father come first in the comma separated ALT
vcf gvcf heterozygous
updated 5.1 years ago by 20 • written 5.4 years ago by ▴ 90
0
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2
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1.2k
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How rare are somatic mutations?
tumor mutect varscan somatic SNP
5.1 years ago by LayneSadler ▴ 90
0
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0
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1.3k
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Comment: C: Are SV tools as thorough in CNV detection as CNVkit?
5.3 years ago by LayneSadler ▴ 90
0
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1
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1.3k
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Are SV tools as thorough in CNV detection as CNVkit?
cnv sv cnvkit manta parliament
5.3 years ago by LayneSadler ▴ 90
0
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0
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3.3k
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Comment: C: VCF - what are overlapping variants?
5.4 years ago by LayneSadler ▴ 90
0
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1
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1.2k
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Comment: C: Are small insertions always single-stranded?
5.4 years ago by LayneSadler ▴ 90
0
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1
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3.3k
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Comment: C: VCF - what are overlapping variants?
5.4 years ago by LayneSadler ▴ 90
8
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4
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3.3k
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VCF - what are overlapping variants?
vcf
updated 5.4 years ago by 164k • written 5.4 years ago by ▴ 90
0
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1
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2.1k
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Comment: C: VCF - does mother or father come first in the comma separated ALT
5.4 years ago by LayneSadler ▴ 90
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0
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2.1k
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Comment: A: VCF - does mother or father come first in the comma separated ALT
5.4 years ago by LayneSadler ▴ 90
0
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0
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2.1k
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Comment: C: VCF - does mother or father come first in the comma separated ALT
5.4 years ago by LayneSadler ▴ 90
0
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1
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1.1k
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Comment: C: gVCF what is a "break-end replacement"
5.4 years ago by LayneSadler ▴ 90
2
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3
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1.1k
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gVCF what is a "break-end replacement"
gvcf
5.4 years ago by LayneSadler ▴ 90
0
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0
replies
1.3k
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PubSub or workflows or both?
workflow pubsub events python
6.0 years ago by LayneSadler ▴ 90
0
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1
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28k
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Comment: A: Creating workflows with snakemake and conda
6.0 years ago by LayneSadler ▴ 90
3
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1
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994
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Does vcf spec indicate cnv duplication of snps?
vcf cnv snp snv ngs
6.4 years ago by LayneSadler ▴ 90
17
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9
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3.1k
views
6 follow
Workflows! Where is the code?
cwl wdl workflows
updated 6.5 years ago by ★ 1.9k • written 6.5 years ago by ▴ 90
0
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1
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3.1k
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Comment: C: Workflows! Where is the code?
6.5 years ago by LayneSadler ▴ 90
4
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2
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1.6k
views
Encrypting BAM files
gdpr hipaa encryption
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 90
0
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1
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3.0k
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Blog: Clarifying the concept of clinical annotation vs bioinformatic annotation
variant-annotation reference-data
updated 21 months ago by 44k • written 7.0 years ago by ▴ 90
88 results • Page 2 of 2
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