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Should homozygotes and heterozygotes be considered differently in GWAS analyses?
homozygote GWAS heterozygote
updated 15 months ago by 4.7k • written 2.6 years ago by ▴ 160
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0
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583
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How to genome-wide association analysis using survival analysis in Plink?
survival GWAS Plink
2.4 years ago by Qingyang Xiao ▴ 160
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2
replies
747
views
How to get the number of distinct variants genotyped from VCF or bed/bim files (GWAS)?
Plink bed GWAS VCF
updated 2.5 years ago by 166k • written 2.5 years ago by ▴ 160
0
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1
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711
views
Can B factors only be calculated from experimentally determined protein structures (e.g. pdb files)?
B-factor pdb protein-structure
updated 2.3 years ago by 45k • written 2.5 years ago by ▴ 160
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0
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559
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How to get evolutionary conservation score
protein proteomics EVmutation Evolutionary conservation
2.6 years ago by Qingyang Xiao ▴ 160
4
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6
replies
1.9k
views
How to extract all the IDs of VCF file for GWAS analyses?
VCF GWAS ID sample
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 160
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1
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1.9k
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Comment: Comment: How to extract all the IDs of VCF file for GWAS analyses?
2.6 years ago by Qingyang Xiao ▴ 160
0
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0
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423
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Are the mixed populations of different ancestries problematic for GWAS analyses?
plink population structure GWAS pca
2.6 years ago by Qingyang Xiao ▴ 160
0
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2
replies
1.2k
views
How to check the quality of VCF file for GWAS analysis
VCF GWAS control Quality
updated 2.6 years ago by ▴ 530 • written 2.6 years ago by ▴ 160
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1
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1.1k
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Comment: Comment: How to extract info of samples of interest from VCF file?
2.6 years ago by Qingyang Xiao ▴ 160
5
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3
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1.1k
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How to extract info of samples of interest from VCF file?
Unix VCF subset command GWAS
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 160
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0
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4.5k
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Comment: Comment: How can I get B factor value of a specific amino acid of a protein sequence, fro
2.6 years ago by Qingyang Xiao ▴ 160
1
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3
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4.5k
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How can I get B factor value of a specific amino acid of a protein sequence, from DSSP?
DSSP temperature Protein factor B-factor
2.6 years ago by Qingyang Xiao ▴ 160
11
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7
replies
5.6k
views
6 follow
Download hundreds of genes' variant csv from gnomAD
genome SNP
updated 3.2 years ago by ▴ 50 • written 6.0 years ago by ▴ 160
1
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2
replies
4.8k
views
LOFTEE doesnt actually annotate Loss-of-function variants
genome snp VEP ensembl
5.2 years ago by Qingyang Xiao ▴ 160
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1
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5.6k
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Comment: C: Download hundreds of genes' variant csv from gnomAD
5.3 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.0k
views
dbSNP allele reference
snp genome assembly
6.0 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.3k
views
Targeted sequencing and meQTL/eQTM/eQTL
SNP rna-seq R next-gen
6.8 years ago by Qingyang Xiao ▴ 160
20
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24
replies
7.9k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 23 months ago by 45k • written 6.9 years ago by ▴ 160
21
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24
replies
36k
views
10 follow
How to read fastq file with Python
sequencing next-gen
updated 6.9 years ago by 36k • written 6.9 years ago by ▴ 160
1
vote
1
reply
3.7k
views
How to have access to TCGA raw data?
RNA-Seq next-gen sequencing
updated 6.9 years ago by 150k • written 6.9 years ago by ▴ 160
1
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1
reply
1.2k
views
Answer: A: Identify lncRNAs - search for tools
7.1 years ago by Qingyang Xiao ▴ 160
0
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1
reply
975
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identifying contribution of specific cell subpopulation from mixture,with RNA-Seq data
RNA-Seq next-gen sequencing
7.1 years ago by Qingyang Xiao ▴ 160
0
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1
reply
1.5k
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Comment: C: Difference between prediction of protein-protein interaction and mRNA-mRNA inter
7.1 years ago by Qingyang Xiao ▴ 160
2
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3
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1.5k
views
Difference between prediction of protein-protein interaction and mRNA-mRNA interaction
next-gen sequencing rna-seq
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 160
4
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2
replies
2.4k
views
FFPE samples for NGS
next-gen sequencing RNA-Seq SNP
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 160
3
votes
3
replies
1.6k
views
Packages/modules for CNV, Indels, SNPs analysis
snp R sequence alignment genome
updated 7.2 years ago by ▴ 400 • written 7.2 years ago by ▴ 160
0
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1
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1.3k
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Does bisulfite sequencing need higher sequencing depth than regular genomic sequencing?
genome sequencing next-gen snp
updated 7.2 years ago by 22k • written 7.2 years ago by ▴ 160
0
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0
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26k
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Comment: C: Difference between tSNE and PCA analysis
7.2 years ago by Qingyang Xiao ▴ 160
31
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14
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26k
views
7 follow
Difference between tSNE and PCA analysis
next-gen rna-seq
updated 14 months ago by 23k • written 7.2 years ago by ▴ 160
1
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1
reply
26k
views
Comment: C: Difference between tSNE and PCA analysis
7.2 years ago by Qingyang Xiao ▴ 160
2
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3
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1.5k
views
Forum: Relationship of bioinformatics analysis tricks and publication impactor factor
next-gen
updated 23 months ago by 45k • written 7.2 years ago by ▴ 160
1
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2
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999
views
Question of " mutation correlation"
sequence next-gen genome
updated 2.6 years ago by 45k • written 7.2 years ago by ▴ 160
0
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0
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1.9k
views
Comment: C: Comparision of R packages in RNA-Seq
7.2 years ago by Qingyang Xiao ▴ 160
3
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3
replies
1.9k
views
Comparision of R packages in RNA-Seq
RNA-Seq next-gen R
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 160
2
votes
2
replies
1.9k
views
RNA-Seq data avaliability online
rna-seq R next-gen sequencing
updated 7.3 years ago by ★ 4.1k • written 7.3 years ago by ▴ 160
1
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2
replies
5.3k
views
How to mark significance in R-making boxplot
R
updated 7.4 years ago by 13k • written 7.4 years ago by ▴ 160
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