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Best practices for counting genes with nanopore RNAseq data
rna-seq nanopore alignment
updated 5.0 years ago by ▴ 10 • written 5.8 years ago by ▴ 90
0
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0
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1.1k
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Comment: C: Use Salmon to annotate a Sam file
5.4 years ago by Florian Bernard ▴ 90
0
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2
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1.1k
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Use Salmon to annotate a Sam file
Salmon RNA-Seq alignment quantification
updated 5.4 years ago by 85k • written 5.4 years ago by ▴ 90
0
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1
reply
1.2k
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retrieve relative position of CDS start for every isoforme
rna isoforme
5.6 years ago by Florian Bernard ▴ 90
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0
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4.0k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.7 years ago by Florian Bernard ▴ 90
0
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0
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1.3k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
5.8 years ago by Florian Bernard ▴ 90
0
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1
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1.3k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
5.8 years ago by Florian Bernard ▴ 90
0
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4
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1.3k
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How to identify long reads coming from ligated cDNAs before sequencing ?
minimap2 ONT nanopore alignment cDNA
5.8 years ago by Florian Bernard ▴ 90
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0
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4.0k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.8 years ago by Florian Bernard ▴ 90
0
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0
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4.0k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.8 years ago by Florian Bernard ▴ 90
0
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1
reply
4.0k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
5.8 years ago by Florian Bernard ▴ 90
0
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1
reply
4.0k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
5.8 years ago by Florian Bernard ▴ 90
0
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0
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1.6k
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Comment: C: How to find a specific sequence within noisy reads ?
6.1 years ago by Florian Bernard ▴ 90
1
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2
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1.6k
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How to find a specific sequence within noisy reads ?
nanopore RNA-Seq python sequence match
6.1 years ago by Florian Bernard ▴ 90
0
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0
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4.8k
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Comment: C: filtering reads that are uniquely mapped
6.2 years ago by Florian Bernard ▴ 90
1
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1
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4.8k
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Comment: C: filtering reads that are uniquely mapped
6.2 years ago by Florian Bernard ▴ 90
0
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0
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4.8k
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Comment: C: filtering reads that are uniquely mapped
6.2 years ago by Florian Bernard ▴ 90
0
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1
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4.8k
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Comment: C: filtering reads that are uniquely mapped
6.2 years ago by Florian Bernard ▴ 90
6
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9
replies
4.8k
views
filtering reads that are uniquely mapped
alignment RNA-Seq samtools python
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 90
5
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12
replies
1.3k
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Identifying covered genes from nanopore cDNA-seq reads
RNA-Seq gene alignment
updated 6.3 years ago by 47k • written 6.3 years ago by ▴ 90
0
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0
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1.3k
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Comment: C: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
0
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0
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1.3k
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Comment: C: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
1
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0
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1.3k
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Answer: A: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
0
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2
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1.3k
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Comment: C: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
1
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0
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1.3k
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Comment: C: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
0
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0
replies
1.3k
views
Comment: C: extracting gene names for RNA-seq reads
6.3 years ago by Florian Bernard ▴ 90
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