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103
votes
42
replies
33k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 10 weeks ago by 23k • written 11.4 years ago by ★ 3.6k
2
votes
2
replies
4.8k
views
IGV resizing tracks
IGV
updated 2.2 years ago by ▴ 10 • written 8.9 years ago by ★ 3.6k
3
votes
6
replies
2.4k
views
Forum: A Css For Small Screen Devices?
meta
updated 2.1 years ago by 45k • written 13.0 years ago by ★ 3.6k
9
votes
7
replies
6.7k
views
6 follow
Memory Efficient Bedtools Sort And Merge With Millions Of Entries?
bedtools bed
updated 3.4 years ago by ★ 1.1k • written 11.9 years ago by ★ 3.6k
9
votes
5
replies
5.0k
views
tool for bam soft clipping reads within bed file regions
bam clipping bed
updated 2.7 years ago by 45k • written 9.1 years ago by ★ 3.6k
2
votes
1
reply
2.7k
views
Is there a standard yaml file to describe Illumina runs: sample_name, barcode, lane, flowcell?
illumina flowcell run lane barcode
updated 4.6 years ago by 20 • written 8.8 years ago by ★ 3.6k
3
votes
6
replies
3.2k
views
Protocol For Normalisation Of Mrna Samples?
mrna
updated 4.8 years ago by 20 • written 12.9 years ago by ★ 3.6k
0
votes
2
replies
36k
views
Comment: C: Samtools And Region List
updated 5.0 years ago by 45k • written 11.2 years ago by ★ 3.6k
53
votes
6
replies
10k
views
8 follow
Tool: list of dockerized bioinformatics apps
docker
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.6k
1
vote
1
reply
11k
views
Answer: A: How To Discard Sequences Longer Than N Nucleotides ?
updated 5.3 years ago by 45k • written 12.2 years ago by ★ 3.6k
0
votes
1
reply
5.7k
views
Comment: C: Mapq Scores Inside Repeats
updated 5.5 years ago by 45k • written 11.0 years ago by ★ 3.6k
0
votes
1
reply
5.7k
views
Comment: C: Mapq Scores Inside Repeats
updated 5.5 years ago by 45k • written 11.0 years ago by ★ 3.6k
1
vote
3
replies
4.0k
views
Calling differential peaks on large set of 3 conditions
peak calling differential macs2
updated 5.7 years ago by ▴ 100 • written 7.9 years ago by ★ 3.6k
0
votes
2
replies
1.8k
views
what is the most complete vcf file of population allele frequencies that can be built/downloaded from public datasets?
genome vcf allele frequencies population genomics
updated 5.8 years ago by 165k • written 5.8 years ago by ★ 3.6k
7
votes
1
reply
65k
views
Answer: A: Subsampling Bam File With Samtools
updated 6.0 years ago by 45k • written 11.7 years ago by ★ 3.6k
0
votes
1
reply
5.0k
views
Comment: C: tool for bam soft clipping reads within bed file regions
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.6k
4
votes
8
replies
8.3k
views
split bed file into several bed files where each region is separated of any other by N bases
bedtools bedops bed
updated 2.7 years ago by 45k • written 9.1 years ago by ★ 3.6k
5
votes
2
replies
2.3k
views
Aligned Pacbio 54X Human Genome?
bam
updated 6.7 years ago by 20 • written 11.1 years ago by ★ 3.6k
5
votes
4
replies
2.2k
views
Forum: Holding Accept Answer For 15 Minutes?
meta deleted-post
updated 2.1 years ago by 45k • written 12.1 years ago by ★ 3.6k
2
votes
1
reply
2.1k
views
Alignability As A Percent Or Coeficient Per Each Human Chromosome?
human genome alignment
updated 7.1 years ago by 20 • written 11.8 years ago by ★ 3.6k
0
votes
0
replies
2.7k
views
Comment: C: Affy 500K positions in hg38
7.4 years ago by 14134125465346445 ★ 3.6k
0
votes
1
reply
4.4k
views
Comment: C: How to update a 23andme, vcf or plink bed file to hg38?
7.4 years ago by 14134125465346445 ★ 3.6k
0
votes
1
reply
4.1k
views
Comment: C: Calling SNPs with low coverage
7.4 years ago by 14134125465346445 ★ 3.6k
2
votes
2
replies
2.6k
views
Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human
updated 7.5 years ago by 20 • written 12.0 years ago by ★ 3.6k
33
votes
11
replies
13k
views
6 follow
How detrimental are duplicate reads in RNAseq experiments?
RNA-Seq duplicate-reads
updated 7.8 years ago by ▴ 90 • written 9.8 years ago by ★ 3.6k
0
votes
4
replies
2.3k
views
fetch fully unaligned pairs and pairs with one unaligned read with samtools view
samtools bam
updated 7.8 years ago by 20 • written 10.5 years ago by ★ 3.6k
21
votes
10
replies
5.1k
views
7 follow
Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller?
GATK variant calling
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 3.6k
5
votes
4
replies
2.7k
views
bam file calculate sliding window insert sizes
bam insert size
updated 7.9 years ago by 105k • written 8.0 years ago by ★ 3.6k
0
votes
0
replies
2.7k
views
Comment: C: bam file calculate sliding window insert sizes
7.9 years ago by 14134125465346445 ★ 3.6k
5
votes
2
replies
6.5k
views
bam stats F1F2/F1R2/R1F2/R1R2/F2F1/F2R1/R2F1/R2R1
bam
updated 8.1 years ago by 13k • written 8.1 years ago by ★ 3.6k
3
votes
1
reply
3.0k
views
Picard MarkDuplicates stuck at Traversing read pair information and detecting duplicates
picard markduplicates bam
8.2 years ago by 14134125465346445 ★ 3.6k
3
votes
2
replies
2.3k
views
non-metric multidimensional scaling for RNAseq or enrichment experiments
RNA-Seq enrichment
8.2 years ago by 14134125465346445 ★ 3.6k
0
votes
1
reply
2.0k
views
IGV idxsession files with bigwig URLs
bigwig IGV
8.2 years ago by 14134125465346445 ★ 3.6k
0
votes
2
replies
1.6k
views
estimation of tissue/cell type abundance and disease/condition using RPKM expression data
RNA-Seq next-gen
8.2 years ago by 14134125465346445 ★ 3.6k
0
votes
0
replies
1.6k
views
Comment: C: single sample RPKM tissue/disease classifier
8.2 years ago by 14134125465346445 ★ 3.6k
67
votes
19
replies
53k
views
17 follow
Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
fastq
updated 21 months ago by 45k • written 12.2 years ago by ★ 3.6k
10
votes
3
replies
6.5k
views
Text Histogram From Sequence Lengths Of Fasta File?
fasta
updated 8.6 years ago by 20 • written 12.9 years ago by ★ 3.6k
0
votes
0
replies
2.6k
views
Answer: A: repeated read ids from Illumina MiniSeq fastq.gz files?
8.6 years ago by 14134125465346445 ★ 3.6k
4
votes
7
replies
2.6k
views
repeated read ids from Illumina MiniSeq fastq.gz files?
fastq illumina
updated 2.0 years ago by 45k • written 8.6 years ago by ★ 3.6k
0
votes
1
reply
2.6k
views
Comment: C: repeated read ids from Illumina MiniSeq fastq.gz files?
8.6 years ago by 14134125465346445 ★ 3.6k
2
votes
3
replies
2.7k
views
Forum: Cloudgene
cloud
updated 2.1 years ago by 45k • written 12.6 years ago by ★ 3.6k
0
votes
1
reply
8.3k
views
Comment: C: split bed file into several bed files where each region is separated of any othe
9.1 years ago by 14134125465346445 ★ 3.6k
0
votes
0
replies
4.7k
views
Comment: C: Black color reads in IGV: bwa-meth
9.1 years ago by 14134125465346445 ★ 3.6k
0
votes
0
replies
4.9k
views
Answer: A: Variant Annotation Integrator From Ucsc
9.2 years ago by 14134125465346445 ★ 3.6k
3
votes
1
reply
1.7k
views
Fast imputation of variants for 4x WGS?
imputation wgs
updated 2.7 years ago by 45k • written 9.2 years ago by ★ 3.6k
1
vote
0
replies
2.0k
views
recommended way of filtering out non-karyotype ref sequences and reads from a bam file?
bam samtools sambamba
9.3 years ago by 14134125465346445 ★ 3.6k
1
vote
1
reply
2.1k
views
hs38DH reference file and HLA*NN:NN:NN sequence names
alignment bwa
9.3 years ago by 14134125465346445 ★ 3.6k
6
votes
2
replies
3.3k
views
Programs That Report Structural Variations For Tumor/Normal In Vcf Format
vcf software sv
updated 2.3 years ago by 45k • written 11.7 years ago by ★ 3.6k
0
votes
2
replies
59k
views
Comment: C: Should We Remove Duplicated Reads In Rna-Seq ?
9.8 years ago by 14134125465346445 ★ 3.6k
0
votes
1
reply
1.8k
views
Pacbio Smrtanalysis Ova Image?
pacbio
updated 21 months ago by 45k • written 11.0 years ago by ★ 3.6k
197 results • Page 1 of 4
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