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3
votes
0
replies
5.9k
views
Answer: A: Compare two trees in Newick format
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.0k
2
votes
0
replies
4.4k
views
Answer: A: Parsing Protein Trees to determine orthologs and paralogs
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.0k
3
votes
0
replies
18k
views
Answer: A: PAML input file format
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 3.0k
10
votes
3
replies
8.5k
views
Answer: A: Visualize / Highlight Specific Nodes In A Taxonomy Tree
updated 5.3 years ago by 45k • written 14.0 years ago by ★ 3.0k
4
votes
1
reply
4.1k
views
Answer: A: Make tree a cladogram in ETE2
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 3.0k
3
votes
1
reply
3.1k
views
Answer: A: Displaying attributes on Tree nodes ETE
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 3.0k
4
votes
1
reply
10k
views
Answer: A: Any software to view newick/nexus trees command line?
updated 5.3 years ago by 45k • written 10.3 years ago by ★ 3.0k
0
votes
0
replies
4.8k
views
Comment: C: How to specify a branch in the tree automatically for branch-site model codeml?
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.0k
4
votes
1
reply
4.8k
views
Answer: A: Displaying tree with attributes as Image with ETE3
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.0k
1
vote
0
replies
3.1k
views
Answer: A: Can we draw phylogenetic tree using a set of Kegg Orthology Terms ?
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.0k
2
votes
1
reply
2.9k
views
Answer: A: Phylogenetic distance betwee species
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 3.0k
0
votes
1
reply
4.8k
views
Comment: C: How to specify a branch in the tree automatically for branch-site model codeml?
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 3.0k
7
votes
0
replies
8.0k
views
Answer: A: Obtain full taxonomic hierarchy from multiple species names
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 3.0k
1
vote
0
replies
5.3k
views
Answer: A: Functional enrichment on orthologous groups
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 3.0k
3
votes
0
replies
3.0k
views
Answer: A: software advise: visualise the phylogenetic tree that uses bubbles on the branc
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 3.0k
3
votes
0
replies
9.5k
views
Comment: C: When Is Dna Better Choice Than Aminoacids For Multiple Sequence Alignments And P
updated 5.5 years ago by 45k • written 13.5 years ago by ★ 3.0k
5
votes
1
reply
22k
views
Answer: A: Can I Choose An Outgroup Based On Phylogenetic Tree Structure Alone?
updated 5.6 years ago by 45k • written 13.5 years ago by ★ 3.0k
2
votes
0
replies
6.4k
views
Answer: A: How To Draw Of Minimum Spanning Tree Of Sequences?
updated 5.6 years ago by 45k • written 13.7 years ago by ★ 3.0k
5
votes
0
replies
18k
views
Answer: A: How Can I Label Internal Branches Of A Phylogenetic Tree?
updated 5.6 years ago by 45k • written 14.0 years ago by ★ 3.0k
0
votes
1
reply
2.4k
views
Answer: A: Phylogenetics:How to Generate a binary newick tree from a list of species
5.8 years ago by jhc ★ 3.0k
2
votes
0
replies
3.0k
views
Answer: A: Prune Trees To Overlapping Taxa
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.0k
0
votes
0
replies
2.0k
views
Answer: A: Phylogeny and motifs search questions
updated 6.6 years ago by 45k • written 9.1 years ago by ★ 3.0k
5
votes
2
replies
5.4k
views
Answer: A: Open Source Library For Radial Phylogram
updated 6.6 years ago by 45k • written 13.8 years ago by ★ 3.0k
0
votes
0
replies
2.4k
views
Answer: A: Compare topologies of trees with non-identical tip labels
6.7 years ago by jhc ★ 3.0k
1
vote
0
replies
1.7k
views
Job: Postdoctoral positions in Comparative Metagenomics and Phylogenomics at CBGP (Madrid, Spain)
phylogenomics metagenomics
updated 22 months ago by 45k • written 6.9 years ago by ★ 3.0k
2
votes
0
replies
2.1k
views
Job: Junior Group Leader position in Computational Systems Biology and Genomics at CBGP (Madrid, Spain
systems-biology computational-biology genomics
updated 22 months ago by 45k • written 6.9 years ago by ★ 3.0k
1
vote
1
reply
1.4k
views
Comment: C: ETE3 compare stop filename truncation
7.0 years ago by jhc ★ 3.0k
1
vote
0
replies
2.1k
views
Job: 3 positions in Computational Genomics at CBGP in Madrid, Spain. (Postdoc, Predoc and Technician)
phylogenomics gene-function metagenomics
updated 22 months ago by 45k • written 7.2 years ago by ★ 3.0k
6
votes
1
reply
2.9k
views
Answer: A: Ultrametric tree in ete3 (python)
7.2 years ago by jhc ★ 3.0k
0
votes
0
replies
2.5k
views
Answer: A: Annotation of taxonomy information in phylogeny tree
7.2 years ago by jhc ★ 3.0k
0
votes
0
replies
5.1k
views
Comment: C: What are those "ENOG" numbers in eggNOG 4.5?
7.7 years ago by jhc ★ 3.0k
0
votes
0
replies
2.9k
views
Answer: A: EggNOG 4.5 database
7.8 years ago by jhc ★ 3.0k
1
vote
0
replies
3.4k
views
Comment: C: Bacterial phylogeny download for a list of species
7.9 years ago by jhc ★ 3.0k
0
votes
0
replies
3.8k
views
Comment: C: Metagenomics functional annotation hmmsearch vs Blast ???
7.9 years ago by jhc ★ 3.0k
5
votes
1
reply
3.8k
views
Answer: A: Metagenomics functional annotation hmmsearch vs Blast ???
7.9 years ago by jhc ★ 3.0k
0
votes
1
reply
5.1k
views
Comment: C: What are those "ENOG" numbers in eggNOG 4.5?
8.0 years ago by jhc ★ 3.0k
1
vote
0
replies
2.8k
views
Comment: C: Are COG IDs consistent across different versions of the eggNOG database?
8.0 years ago by jhc ★ 3.0k
3
votes
0
replies
3.1k
views
Answer: A: Software for counting mutations over a tree
8.1 years ago by jhc ★ 3.0k
5
votes
1
reply
5.1k
views
Answer: A: What are those "ENOG" numbers in eggNOG 4.5?
8.1 years ago by jhc ★ 3.0k
2
votes
0
replies
3.2k
views
Answer: A: Metrics to evaluate tree congruence
8.2 years ago by jhc ★ 3.0k
0
votes
0
replies
5.4k
views
Answer: A: Removing duplicate leaves/tips from newick tree
8.4 years ago by jhc ★ 3.0k
4
votes
1
reply
2.1k
views
Answer: A: Phylogenetic tree with tagging
8.4 years ago by jhc ★ 3.0k
1
vote
1
reply
5.5k
views
Comment: C: Find orthologs using EggNOG and local HMMER search for multiple transcripts
8.5 years ago by jhc ★ 3.0k
1
vote
1
reply
5.5k
views
Comment: C: Find orthologs using EggNOG and local HMMER search for multiple transcripts
8.5 years ago by jhc ★ 3.0k
1
vote
1
reply
5.5k
views
Comment: C: Find orthologs using EggNOG and local HMMER search for multiple transcripts
8.5 years ago by jhc ★ 3.0k
3
votes
2
replies
5.5k
views
Answer: A: Find orthologs using EggNOG and local HMMER search for multiple transcripts
8.5 years ago by jhc ★ 3.0k
1
vote
0
replies
2.7k
views
Answer: A: Tree file and taxonomy
8.5 years ago by jhc ★ 3.0k
0
votes
0
replies
1.8k
views
Answer: A: subtree corresponding to ev.etype
8.5 years ago by jhc ★ 3.0k
0
votes
0
replies
2.4k
views
Comment: C: treefix tree output format conversion
8.5 years ago by jhc ★ 3.0k
0
votes
0
replies
1.9k
views
Comment: C: deep paralog and in paralog
8.5 years ago by jhc ★ 3.0k
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