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2
votes
4
replies
2.6k
views
Issue with bcftools csq phasing
phasing genotyping
updated 3.4 years ago by ▴ 10 • written 6.1 years ago by ▴ 140
0
votes
2
replies
4.5k
views
[ti_index_core] the chromosome blocks not continuous at line xxxx, is the file sorted? [pos 1]
vcf index variant
updated 3.8 years ago by 20 • written 6.7 years ago by ▴ 140
0
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0
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3.0k
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Comment: C: assembly of contigs into scaffolds
5.9 years ago by shubhra.bhattacharya ▴ 140
1
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1
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3.0k
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Answer: A: assembly of contigs into scaffolds
5.9 years ago by shubhra.bhattacharya ▴ 140
1
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0
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4.6k
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Answer: A: How come Alignment length is longer than Subject sequence length?
5.9 years ago by shubhra.bhattacharya ▴ 140
1
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0
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2.7k
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Comment: C: Can gffread extract specific region sequences from vcf or fasta file?
5.9 years ago by shubhra.bhattacharya ▴ 140
1
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0
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2.7k
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Comment: C: Can gffread extract specific region sequences from vcf or fasta file?
5.9 years ago by shubhra.bhattacharya ▴ 140
1
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1
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2.7k
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Answer: A: Can gffread extract specific region sequences from vcf or fasta file?
5.9 years ago by shubhra.bhattacharya ▴ 140
0
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0
replies
969
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Plasmid obtained from assembly is incomplete.
plasmid assembly Recycler
5.9 years ago by shubhra.bhattacharya ▴ 140
0
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0
replies
1.6k
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Comment: C: How can I extract SNP from bacterial genome?
5.9 years ago by shubhra.bhattacharya ▴ 140
0
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1
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1.6k
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Answer: A: How can I extract SNP from bacterial genome?
5.9 years ago by shubhra.bhattacharya ▴ 140
0
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0
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9.0k
views
Comment: Comment: Regular expression matching with Python and biopython SeqIO
updated 3.6 years ago by 44k • written 6.0 years ago by ▴ 140
0
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0
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1.7k
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Comment: C: filter genome above N50 value
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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2
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1.7k
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Comment: C: filter genome above N50 value
6.0 years ago by shubhra.bhattacharya ▴ 140
4
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7
replies
1.7k
views
filter genome above N50 value
assembly
updated 6.0 years ago by 55k • written 6.0 years ago by ▴ 140
0
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1
reply
1.7k
views
Comment: C: Finding out which genes are covered the most
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
2.1k
views
Comment: C: How to get fasta sequences for CDS if I have proteins IDs?
6.0 years ago by shubhra.bhattacharya ▴ 140
2
votes
5
replies
2.1k
views
GO network analysis
gene ontology
updated 6.0 years ago by ▴ 160 • written 6.0 years ago by ▴ 140
0
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2
replies
3.7k
views
dN/dS ratio from .vcf file
synonmous non-synomous mutation
updated 13 months ago by ▴ 920 • written 6.0 years ago by ▴ 140
0
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1
reply
1.7k
views
Comment: C: Finding out which genes are covered the most
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
1.7k
views
Comment: C: Finding out which genes are covered the most
6.0 years ago by shubhra.bhattacharya ▴ 140
5
votes
9
replies
1.7k
views
Finding out which genes are covered the most
coverage genes
updated 6.0 years ago by 164k • written 6.0 years ago by ▴ 140
0
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0
replies
2.1k
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Comment: C: GO network analysis
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
2.1k
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Comment: C: GO network analysis
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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0
replies
2.0k
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Comment: C: why I used bcftools mpilup and call commond, no indel variance were genearte?
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
2.7k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
2.7k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.0 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
2.7k
views
Answer: A: How to perform VennDiagram from a VCF file?
6.0 years ago by shubhra.bhattacharya ▴ 140
1
vote
0
replies
2.9k
views
Answer: A: MAFTOOLS HELP - Mutational Signature
6.1 years ago by shubhra.bhattacharya ▴ 140
0
votes
0
replies
842
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Answer: A: SNP discovery form replicated files of 2 varities
6.1 years ago by shubhra.bhattacharya ▴ 140
1
vote
0
replies
2.9k
views
Answer: A: Annovar Output Interpretation
updated 6.1 years ago by 85k • written 6.1 years ago by ▴ 140
0
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0
replies
1.2k
views
Comment: C: Bowtie2 and bwa *big* disparity in alignment percentages
6.1 years ago by shubhra.bhattacharya ▴ 140
0
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2
replies
1.2k
views
Bowtie2 and bwa *big* disparity in alignment percentages
alignment
updated 6.1 years ago by 101k • written 6.1 years ago by ▴ 140
0
votes
1
reply
2.6k
views
Comment: C: Issue with bcftools csq phasing
6.1 years ago by shubhra.bhattacharya ▴ 140
0
votes
0
replies
9.3k
views
Comment: C: Extracting specific SNPs from vcf file
6.1 years ago by shubhra.bhattacharya ▴ 140
1
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0
replies
1.4k
views
Comment: C: picard tools CalculateHsMetrics error
6.1 years ago by shubhra.bhattacharya ▴ 140
1
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1
reply
1.5k
views
Answer: C: How to Interpret Deletions from varscan?
6.1 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
1.4k
views
Comment: C: picard tools CalculateHsMetrics error
6.1 years ago by shubhra.bhattacharya ▴ 140
4
votes
5
replies
1.4k
views
picard tools CalculateHsMetrics error
picard tools Metrics
updated 6.1 years ago by • 0 • written 6.1 years ago by ▴ 140
0
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0
replies
1.2k
views
Comment: C: Fetched gene from gff file shows similarity to other organism
6.1 years ago by shubhra.bhattacharya ▴ 140
0
votes
2
replies
1.2k
views
Fetched gene from gff file shows similarity to other organism
gff reference
6.1 years ago by shubhra.bhattacharya ▴ 140
1
vote
6
replies
4.2k
views
Probable bug in bcftools while parsing headers
bug bcftools
updated 3.3 years ago by 3.1k • written 6.1 years ago by ▴ 140
1
vote
1
reply
1.2k
views
Varscan read count output conversion
varscan
6.2 years ago by shubhra.bhattacharya ▴ 140
0
votes
1
reply
2.1k
views
Comment: C: mice whole Exome sequencing Analysis
6.3 years ago by shubhra.bhattacharya ▴ 140
0
votes
0
replies
7.6k
views
Comment: C: Explain the definition of DELLY output
6.3 years ago by shubhra.bhattacharya ▴ 140
0
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1
reply
7.6k
views
Comment: C: Explain the definition of DELLY output
6.3 years ago by shubhra.bhattacharya ▴ 140
0
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0
replies
2.2k
views
Comment: C: GT (genotype information) in haploid organism has a value of 2 .
6.3 years ago by shubhra.bhattacharya ▴ 140
1
vote
2
replies
2.2k
views
GT (genotype information) in haploid organism has a value of 2 .
snp genotype
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 140
0
votes
1
reply
4.1k
views
Answer: A: number of functions is more than namber of variants in snpEff's output
6.5 years ago by shubhra.bhattacharya ▴ 140
0
votes
1
reply
902
views
Data set to perform DGE
trancriptomics DGE
updated 6.6 years ago by ▴ 790 • written 6.6 years ago by ▴ 140
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