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4
votes
3
replies
827
views
How to edit the fasta headers in a multiline fasta file?
gene genome protein
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 210
2
votes
0
replies
673
views
Comment: Comment: Repeat Masking step is really important on Low coverage genomes (~9x-30X) ?
2.4 years ago by pinn ▴ 210
0
votes
1
reply
1.8k
views
Comment: Comment: Difference b/w primary and alternate genome assembly ?
2.4 years ago by pinn ▴ 210
0
votes
0
replies
2.0k
views
Comment: Comment: ncbi-genome-download - bacterial and viral genomes ?
2.5 years ago by pinn ▴ 210
2
votes
1
reply
2.4k
views
Comment: Comment: How to bechmark a human dataset ? (is it needed)
3.0 years ago by pinn ▴ 210
9
votes
5
replies
2.4k
views
How to bechmark a human dataset ? (is it needed)
genome next-gen
updated 3.0 years ago by 22k • written 6.8 years ago by ▴ 210
11
votes
11
replies
8.6k
views
7 follow
snpEFF not able to download GRCH38 ?
genome Annotation
3.0 years ago by pinn ▴ 210
3
votes
5
replies
2.2k
views
Does Last aligner only outputs the mapped reads to a bam file ?
assembly alignment sequencing next-gen genome
updated 3.4 years ago by • 0 • written 6.3 years ago by ▴ 210
2
votes
0
replies
975
views
Comment: Comment: How to download Time Calibration Data for Phylogenetic tree estimation ?
3.6 years ago by pinn ▴ 210
1
vote
1
reply
1.3k
views
Comment: Comment: How to calculate the p-value (?) using LRT from codeml output ?
3.6 years ago by pinn ▴ 210
0
votes
1
reply
1.5k
views
Comment: Comment: How to extract only the specific fasta sequences by matching the ID's to a diff
3.6 years ago by pinn ▴ 210
2
votes
3
replies
1.5k
views
How to extract only the specific fasta sequences by matching the ID's to a different source files ?
RNA alignment DNA
updated 3.6 years ago by ★ 2.2k • written 3.6 years ago by ▴ 210
2
votes
1
reply
1.0k
views
Answer: Answer: Finding genes under positive selection in non-model species - Phylotranscriptomi
3.7 years ago by pinn ▴ 210
0
votes
1
reply
1.7k
views
Comment: C: rnaQUAST-2.1.0/BUSCO, blast-2.10.0 multithreading problem?
4.2 years ago by pinn ▴ 210
1
vote
0
replies
867
views
Comment: C: The gene names ending with *like suffix ?
4.2 years ago by pinn ▴ 210
4
votes
7
replies
5.1k
views
What is Left align and parsimonious (VCF normalisation) ?
genome SNP next-gen sequence
updated 4.7 years ago by ▴ 40 • written 6.8 years ago by ▴ 210
0
votes
1
reply
11k
views
Comment: C: How To Create A Bioinformatics Pipeline Using Spotify !
updated 4.9 years ago by 44k • written 6.7 years ago by ▴ 210
1
vote
4
replies
2.0k
views
How to convert soap2 output to sam ?
Assembly genome
updated 5.3 years ago by • 0 • written 6.5 years ago by ▴ 210
0
votes
0
replies
2.6k
views
Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
6.2 years ago by pinn ▴ 210
0
votes
1
reply
2.6k
views
Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
6.2 years ago by pinn ▴ 210
0
votes
1
reply
2.6k
views
Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
6.2 years ago by pinn ▴ 210
0
votes
2
replies
2.6k
views
Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 210
0
votes
13
replies
2.6k
views
Other then picard better way to calculate insertmetrics from a bam file ?
alignment next-gen assembly genome
updated 6.2 years ago by ★ 1.9k • written 6.2 years ago by ▴ 210
0
votes
1
reply
2.6k
views
Comment: A: Other then picard better way to calculate insertmetrics from a bam file ?
6.2 years ago by pinn ▴ 210
0
votes
1
reply
1.8k
views
Comment: C: Properly paired sequences ?
6.2 years ago by pinn ▴ 210
2
votes
5
replies
1.8k
views
Properly paired sequences ?
genome assembly sequence alignment
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 210
0
votes
0
replies
1.8k
views
Comment: C: Properly paired sequences ?
6.2 years ago by pinn ▴ 210
5
votes
8
replies
3.2k
views
Samtools, not sorting a bam file correctly ?
Assembly genome next-gen
updated 6.4 years ago by 44k • written 6.4 years ago by ▴ 210
0
votes
2
replies
3.2k
views
Comment: C: Samtools, not sorting a bam file correctly ?
6.4 years ago by pinn ▴ 210
3
votes
8
replies
3.5k
views
Comparing alignment stats BWAmem vs. Soap2 aligner
genome next-gen alignment
updated 6.4 years ago by 44k • written 6.4 years ago by ▴ 210
0
votes
0
replies
3.5k
views
Comment: C: Comparing alignment stats BWAmem vs. Soap2 aligner
6.4 years ago by pinn ▴ 210
0
votes
1
reply
3.5k
views
Comment: C: Comparing alignment stats BWAmem vs. Soap2 aligner
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 210
0
votes
1
reply
3.5k
views
Comment: A: Comparing alignment stats BWAmem vs. Soap2 aligner
6.4 years ago by pinn ▴ 210
0
votes
0
replies
2.3k
views
Comment: C: gSNAP aligner generating truncated sam file ?
6.5 years ago by pinn ▴ 210
3
votes
5
replies
2.3k
views
gSNAP aligner generating truncated sam file ?
Assembly genome next-gen alignment
updated 6.5 years ago by 35k • written 6.5 years ago by ▴ 210
0
votes
1
reply
2.3k
views
Comment: C: gSNAP aligner generating truncated sam file ?
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 210
0
votes
0
replies
2.0k
views
Comment: C: How to convert soap2 output to sam ?
6.5 years ago by pinn ▴ 210
0
votes
0
replies
2.5k
views
Comment: C: Gold standard datasets
6.6 years ago by pinn ▴ 210
0
votes
1
reply
2.4k
views
Comment: C: BAN - Best alignment normalisation error
6.6 years ago by pinn ▴ 210
0
votes
0
replies
1.7k
views
Comment: C: SMaSH installation error
6.6 years ago by pinn ▴ 210
0
votes
1
reply
8.6k
views
Comment: C: snpEFF not able to download GRCH38 ?
6.6 years ago by pinn ▴ 210
0
votes
2
replies
2.5k
views
Comment: C: Gold standard datasets
6.6 years ago by pinn ▴ 210
0
votes
0
replies
1.9k
views
Comment: C: Luigi Error NGS pipeline ?
6.6 years ago by pinn ▴ 210
0
votes
3
replies
1.9k
views
Luigi Error NGS pipeline ?
next-gen sequence
updated 6.6 years ago by 104k • written 6.7 years ago by ▴ 210
8
votes
6
replies
2.5k
views
Gold standard datasets
genome
updated 6.6 years ago by ★ 2.9k • written 6.6 years ago by ▴ 210
0
votes
0
replies
11k
views
Comment: C: How To Create A Bioinformatics Pipeline Using Spotify !
6.7 years ago by pinn ▴ 210
2
votes
6
replies
1.7k
views
SMaSH installation error
software error sequencing alignment SNP
updated 6.8 years ago by 20 • written 6.8 years ago by ▴ 210
0
votes
1
reply
5.1k
views
Comment: C: What is Left align and parsimonious (VCF normalisation) ?
6.8 years ago by pinn ▴ 210
0
votes
0
replies
2.7k
views
Comment: C: De novo assembly
6.8 years ago by pinn ▴ 210
0
votes
1
reply
7.5k
views
Comment: C: Biallelic and Multiallelic explain
6.8 years ago by pinn ▴ 210
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