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Comment: Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
9 hours ago by swbarnes2 14k
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199
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Answer: Answer: How to include the lane index in STARsolo count matrix barcodes.tsv?
12 hours ago by swbarnes2 14k
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623
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Comment: Comment: bcl2fastq
5 days ago by swbarnes2 14k
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2
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623
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Answer: Answer: bcl2fastq
6 days ago by swbarnes2 14k
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458
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Answer: Answer: Contrasts for comparing condition within tissue
13 days ago by swbarnes2 14k
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539
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Comment: Comment: Optical Duplicates
13 days ago by swbarnes2 14k
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539
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Comment: Comment: Optical Duplicates
14 days ago by swbarnes2 14k
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481
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Answer: Answer: Perform DESeq2 with One factor with three levels vs Two factor with two levels
16 days ago by swbarnes2 14k
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693
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Comment: Comment: Question about edgeR p-values/FDR values
22 days ago by swbarnes2 14k
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439
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Comment: Comment: alignment to human transcriptome with Bowtie2
23 days ago by swbarnes2 14k
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1
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439
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Answer: Answer: alignment to human transcriptome with Bowtie2
26 days ago by swbarnes2 14k
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427
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Comment: Comment: Paired-end sequencing with inconsistent quality/number of reads
27 days ago by swbarnes2 14k
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568
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Comment: Comment: Explanation of DESeq factor leveling
6 weeks ago by swbarnes2 14k
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1.6k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
6 weeks ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
6 weeks ago by swbarnes2 14k
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2
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843
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
8 weeks ago by swbarnes2 14k
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1
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843
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
8 weeks ago by swbarnes2 14k
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0
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368
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Answer: Answer: Comparing exposure time points of RNA-seq data of samples exposed to various tre
8 weeks ago by swbarnes2 14k
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465
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Comment: Comment: RNASeq Analysis: data from different library
8 weeks ago by swbarnes2 14k
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843
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
8 weeks ago by swbarnes2 14k
2
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1
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385
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Answer: Answer: Variant callers for single cell WGS
8 weeks ago by swbarnes2 14k
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1
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843
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Answer: Answer: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
8 weeks ago by swbarnes2 14k
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0
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614
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Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
9 weeks ago by swbarnes2 14k
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2
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614
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Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
9 weeks ago by swbarnes2 14k
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0
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377
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
9 weeks ago by swbarnes2 14k
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1
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466
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Answer: Answer: DEseq2 with different designs matrix
11 weeks ago by swbarnes2 14k
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354
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Answer: Answer: DEseq2 interactions
3 months ago by swbarnes2 14k
2
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523
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Answer: Answer: are illumina fastq files typically split by lane?
3 months ago by swbarnes2 14k
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1
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317
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Answer: Answer: Time-series statistics for a small amount of genes
3 months ago by swbarnes2 14k
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1
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360
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Comment: Comment: flipped BAM files in IGV after STAR aligner
3 months ago by swbarnes2 14k
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0
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1.3k
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Comment: Comment: Aligning reads from mouse samples that express 1 human gene
3 months ago by swbarnes2 14k
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0
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592
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Comment: Comment: Batch correction in RNAseq
3 months ago by swbarnes2 14k
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1.2k
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
3 months ago by swbarnes2 14k
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0
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531
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Comment: Comment: Merging two sequencing datasets
3 months ago by swbarnes2 14k
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0
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531
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Answer: Answer: Merging two sequencing datasets
3 months ago by swbarnes2 14k
1
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0
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392
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Comment: Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
3 months ago by swbarnes2 14k
2
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1
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392
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Answer: Answer: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
3 months ago by swbarnes2 14k
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0
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519
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Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
4 months ago by swbarnes2 14k
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1
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519
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Answer: Answer: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
4 months ago by swbarnes2 14k
0
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1
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698
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Comment: Comment: bam is in a format that cannot be usefully indexed
4 months ago by swbarnes2 14k
1
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0
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269
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Answer: Answer: DESeq2 sizeFactor for Bacterial RNASeq
4 months ago by swbarnes2 14k
0
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0
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847
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Answer: Answer: Bacterial RNASeq doubts
4 months ago by swbarnes2 14k
1
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1
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592
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Answer: Answer: Not retrieving Mitochondrial Genes in Single Cell analysis
4 months ago by swbarnes2 14k
1
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1
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681
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Answer: Answer: Two different RNA sequencing sets that have gene names set up differently - how
4 months ago by swbarnes2 14k
5
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1
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1.8k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
4 months ago by swbarnes2 14k
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1
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390
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Answer: Answer: Batch effects in RNAseq
5 months ago by swbarnes2 14k
1
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0
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872
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Comment: Comment: Interaction analysis using DESeq while adjusting for covariates.
5 months ago by swbarnes2 14k
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0
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611
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Comment: Comment: RNA Seq Paired End High Duplication Rate
5 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
5 months ago by swbarnes2 14k
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0
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402
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Comment: Comment: Batch correction prior to running DESEQ2
5 months ago by swbarnes2 14k
2,066 results • Page 1 of 42
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