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194
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
20 hours ago by swbarnes2 14k
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275
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
20 hours ago by swbarnes2 14k
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252
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
1 day ago by swbarnes2 14k
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415
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
4 days ago by swbarnes2 14k
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228
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
4 days ago by swbarnes2 14k
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415
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
4 days ago by swbarnes2 14k
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339
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Answer: Answer: Sequence read length shorter than flow cell specification
12 days ago by swbarnes2 14k
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709
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Comment: Comment: PCA plot (Suggestions Needed)
12 days ago by swbarnes2 14k
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912
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Comment: Comment: Adding CB tag to bam file
13 days ago by swbarnes2 14k
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709
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Comment: Comment: PCA plot (Suggestions Needed)
13 days ago by swbarnes2 14k
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709
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Comment: Comment: PCA plot (Suggestions Needed)
13 days ago by swbarnes2 14k
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1
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558
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Comment: Comment: To get p-values for the TPM
13 days ago by swbarnes2 14k
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367
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Comment: Comment: Should I use unpaired reads from trimmomatic
14 days ago by swbarnes2 14k
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298
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Answer: Answer: from row count to tpm
15 days ago by swbarnes2 14k
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502
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Comment: Comment: Marking duplicates using UMIs
16 days ago by swbarnes2 14k
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532
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Comment: Comment: Free/open source 23andme-like analysis
17 days ago by swbarnes2 14k
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
17 days ago by swbarnes2 14k
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1
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912
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Comment: Comment: Adding CB tag to bam file
17 days ago by swbarnes2 14k
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779
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Comment: Comment: RNA seq differential expression analysis
19 days ago by swbarnes2 14k
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1
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912
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Answer: Answer: Adding CB tag to bam file
19 days ago by swbarnes2 14k
2
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1
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692
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
20 days ago by swbarnes2 14k
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611
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
5 weeks ago by swbarnes2 14k
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1
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611
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
5 weeks ago by swbarnes2 14k
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436
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
5 weeks ago by swbarnes2 14k
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430
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
5 weeks ago by swbarnes2 14k
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332
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
6 weeks ago by swbarnes2 14k
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305
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Answer: Answer: Detecting viruses in human rna seq data
7 weeks ago by swbarnes2 14k
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1
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421
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
7 weeks ago by swbarnes2 14k
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571
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
7 weeks ago by swbarnes2 14k
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0
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578
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Comment: Comment: RNA_seq
7 weeks ago by swbarnes2 14k
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578
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Answer: Answer: RNA_seq
7 weeks ago by swbarnes2 14k
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0
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373
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
8 weeks ago by swbarnes2 14k
2
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0
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389
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
8 weeks ago by swbarnes2 14k
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1
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551
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Answer: Answer: RNA Seq Sample Outlier
8 weeks ago by swbarnes2 14k
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419
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
8 weeks ago by swbarnes2 14k
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1
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469
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
8 weeks ago by swbarnes2 14k
2
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1
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317
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Answer: Answer: Single cell rna sequencing analysis using R help
9 weeks ago by swbarnes2 14k
3
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432
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
9 weeks ago by swbarnes2 14k
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254
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Answer: Answer: biological replicate in STAR command
10 weeks ago by swbarnes2 14k
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398
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Answer: Answer: PCA plot analysis
10 weeks ago by swbarnes2 14k
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1
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453
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
11 weeks ago by swbarnes2 14k
2
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325
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Comment: Comment: Getting less DE genes when incorporating all samples
11 weeks ago by swbarnes2 14k
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464
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Comment: Comment: Count table statistical analysis
11 weeks ago by swbarnes2 14k
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1
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587
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
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0
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587
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
1
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0
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600
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Comment: Comment: Three fastq files
3 months ago by swbarnes2 14k
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0
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505
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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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0
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576
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
2,005 results • Page 1 of 41
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