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Comment: Comment: DESeq2 contrast multiple treated conditions versus multiple control conditions
2.8 years ago by swbarnes2 14k
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1.3k
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Comment: Comment: I can't understand my sam files
2.8 years ago by swbarnes2 14k
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2
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1.9k
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Answer: Answer: DESeq2 contrast multiple treated conditions versus multiple control conditions
2.8 years ago by swbarnes2 14k
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1.3k
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Answer: Answer: Weird output of DESeq2 when using single one sample from one group agains the ot
updated 2.8 years ago by 85k • written 2.8 years ago by 14k
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1.1k
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Comment: Comment: STAR aligner.. Are reads checked against each chromosome sequentially?
2.8 years ago by swbarnes2 14k
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987
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Answer: Answer: Pipeline analysis used to analyze RNA-seq data
2.9 years ago by swbarnes2 14k
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4.1k
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Comment: Comment: Combining multiple 10x scRNAseq datasets
2.9 years ago by swbarnes2 14k
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3.2k
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Answer: Answer: normalization for unsupervised analysis by DESeq2
2.9 years ago by swbarnes2 14k
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767
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Answer: Answer: Two genotypes, two ages and three conditions - DESeq2
2.9 years ago by swbarnes2 14k
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1
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4.1k
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Comment: Comment: How can I colour UMAP by sample batches
2.9 years ago by swbarnes2 14k
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1
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1.7k
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Comment: Comment: Unable to convert from sam to bam file.
2.9 years ago by swbarnes2 14k
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1.1k
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Comment: Comment: Error in DESeqDataSetFromMatrix /.../ ncol(countData) == nrow(colData) is not
2.9 years ago by swbarnes2 14k
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1
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1.3k
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Answer: Answer: Methods for visualizing TPM of gene samples
2.9 years ago by swbarnes2 14k
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1.6k
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Comment: Comment: Strangely too low P-value and Adjusted P-value(FDR) DESeq2 and edgeR
2.9 years ago by swbarnes2 14k
1
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1
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1.1k
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Answer: Answer: Error in DESeqDataSetFromMatrix /.../ ncol(countData) == nrow(colData) is not
2.9 years ago by swbarnes2 14k
1
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0
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527
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Answer: Answer: Question about Spaceranger
2.9 years ago by swbarnes2 14k
2
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1
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2.4k
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Answer: Answer: Cannot differentiate between groups with heatmap
2.9 years ago by swbarnes2 14k
1
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2
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3.3k
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Comment: Comment: How to analyze the scRNA seq Fastq files from NCBI
2.9 years ago by swbarnes2 14k
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3.3k
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Comment: Comment: How to analyze the scRNA seq Fastq files from NCBI
2.9 years ago by swbarnes2 14k
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1
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1.8k
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Comment: Comment: Is my output .bam file from STAR ok?
2.9 years ago by swbarnes2 14k
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1
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1.8k
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Comment: Comment: Is my output .bam file from STAR ok?
2.9 years ago by swbarnes2 14k
1
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1.7k
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Answer: Answer: DESeq2: "model matrix is not full rank"
2.9 years ago by swbarnes2 14k
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1
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2.1k
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Answer: Answer: how to align paired and unpaired fastq files of a sample using STAR?
2.9 years ago by swbarnes2 14k
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2.0k
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Answer: Answer: Telling apart control and treatment groups in Seurat Visualizations
2.9 years ago by swbarnes2 14k
2
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0
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987
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Answer: Answer: Gene expression value
2.9 years ago by swbarnes2 14k
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1
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2.2k
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Answer: Answer: DESeq2 comparisons using contrast
3.0 years ago by swbarnes2 14k
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0
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1.8k
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Answer: Answer: How to convert cloupe files to mtx
3.0 years ago by swbarnes2 14k
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1
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3.1k
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Comment: Comment: How to get normalized count table from DESeq?
3.0 years ago by swbarnes2 14k
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2
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1.0k
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Comment: Comment: Doubt samtools flagstat
3.0 years ago by swbarnes2 14k
1
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0
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1.6k
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Comment: Comment: Dropseq, GSE124872 and structure of the reads in the FastQ files
3.0 years ago by swbarnes2 14k
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0
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2.1k
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Comment: Comment: Deseq2 dataframematrix error
3.0 years ago by swbarnes2 14k
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0
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1.1k
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Comment: Comment: Error "start too small" when running htseq-count on a sorted .bam file
3.0 years ago by swbarnes2 14k
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0
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9.2k
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Comment: Comment: Adapter content in FASTQ file
3.0 years ago by swbarnes2 14k
1
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1
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1.6k
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Comment: Comment: Time series RNA seq design query
3.0 years ago by swbarnes2 14k
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1
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1.5k
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Comment: Comment: Will Kallisto show a decrease in the TPM value if I have knocked out 2 of the 8
3.0 years ago by swbarnes2 14k
0
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1
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1.6k
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Comment: Comment: Time series RNA seq design query
3.0 years ago by swbarnes2 14k
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0
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1.9k
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Comment: Comment: Large difference in mean reads per cell from cellranger and nCount_RNA from Seur
3.0 years ago by swbarnes2 14k
0
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0
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1.3k
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Comment: Comment: Analyzing DEG from different dataset in my study design
3.0 years ago by swbarnes2 14k
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1
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1.3k
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Comment: Comment: Analyzing DEG from different dataset in my study design
3.0 years ago by swbarnes2 14k
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1
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1.0k
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Comment: Comment: FeatureCount summary in RNA_Seq analysis
3.0 years ago by swbarnes2 14k
1
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0
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1.5k
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Comment: Comment: sam to bam then delete sam file
3.0 years ago by swbarnes2 14k
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0
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914
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Comment: Comment: Error after STAR mapping
3.0 years ago by swbarnes2 14k
0
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0
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1.3k
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Answer: Answer: Cellranger for BGI scRNAseq sequencing data with "Low Fraction Reads in Cells"?
3.0 years ago by swbarnes2 14k
0
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0
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691
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Answer: Answer: Deseq2 model matrix error
3.0 years ago by swbarnes2 14k
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1
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1.2k
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Answer: Answer: Retrieving and interpreting specific contrast results from an interaction experi
3.0 years ago by swbarnes2 14k
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1
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1.8k
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Comment: Comment: When I change samples grouping for normalization by DESeq2 I get different resul
3.0 years ago by swbarnes2 14k
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2.0k
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Comment: Comment: filtering most variable genes
3.0 years ago by swbarnes2 14k
1
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1
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3.0k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
3.0 years ago by swbarnes2 14k
1
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0
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3.0k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
3.0 years ago by swbarnes2 14k
0
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1
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1.2k
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Comment: Comment: how to extract normalized expression from DESeq2 object (dds)?
3.0 years ago by swbarnes2 14k
2,066 results • Page 10 of 42
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