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Comment: Comment: Which covariates and factors to include in model matrix
3.0 years ago by swbarnes2 14k
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1.2k
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Answer: Answer: how to extract normalized expression from DESeq2 object (dds)?
3.0 years ago by swbarnes2 14k
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1.3k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
3.0 years ago by swbarnes2 14k
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4.4k
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Answer: Answer: using rsem sample.genome.STAR.genome.bam for calculating expression
3.0 years ago by swbarnes2 14k
4
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4.0k
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Answer: Answer: Which covariates and factors to include in model matrix
3.0 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: When I convert the Ensembl IDs to gene symbols, why lots of genes are duplicated
3.0 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Cell ranger reads do not match Seurat reads
3.0 years ago by swbarnes2 14k
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808
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Answer: Answer: DEG analysis without biological Replication
3.1 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: Analyzing counts over 3 different timepoints and 2 conditions with DESeq2
3.1 years ago by swbarnes2 14k
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1.7k
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Answer: Answer: Analyzing counts over 3 different timepoints and 2 conditions with DESeq2
3.1 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: Command line .sam file processing
3.1 years ago by swbarnes2 14k
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2.1k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
3.1 years ago by swbarnes2 14k
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2
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2.1k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
3.1 years ago by swbarnes2 14k
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850
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Answer: Answer: Reads per UMI from 10X Chromium RNAseq runs
3.1 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: Ncbi fastq-dump with multiple lanes and cellranger count
3.1 years ago by swbarnes2 14k
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3.7k
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Comment: Comment: Low mapping frequency on STAR
3.1 years ago by swbarnes2 14k
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3.7k
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Comment: Comment: Low mapping frequency on STAR
3.1 years ago by swbarnes2 14k
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1
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1.0k
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Answer: Answer: Error in Galaxy using Deseq2 "Error in data.frame(..., check.names = FALSE) :"
3.1 years ago by swbarnes2 14k
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3.7k
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Comment: Comment: Low mapping frequency on STAR
3.1 years ago by swbarnes2 14k
1
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1
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1.5k
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Answer: Answer: scRNA-seq: To merge technical sequencing replicates or not to merge?
3.1 years ago by swbarnes2 14k
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2.3k
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Comment: Comment: error while plot data with deSeq2
3.1 years ago by swbarnes2 14k
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1
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2.3k
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Comment: Comment: error while plot data with deSeq2
3.1 years ago by swbarnes2 14k
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1
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2.3k
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Comment: Comment: error while plot data with deSeq2
3.1 years ago by swbarnes2 14k
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794
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Answer: Answer: RNA-seq: Sequencing data has two coverages
3.1 years ago by swbarnes2 14k
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748
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Answer: Answer: Normalize Data in R and Heatmap
3.1 years ago by swbarnes2 14k
3
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1
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923
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Answer: Answer: DESeq2 R markdown plotting problem
3.1 years ago by swbarnes2 14k
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1.1k
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Answer: Answer: How should I align my single-end fastq file?
3.1 years ago by swbarnes2 14k
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1
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3.0k
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Answer: Answer: featureCounts has low successfully assigned reads
3.1 years ago by swbarnes2 14k
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0
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743
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Answer: Answer: Sequence Duplication Levels
3.1 years ago by swbarnes2 14k
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1
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1.5k
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Comment: Comment: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
3.1 years ago by swbarnes2 14k
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1
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2.4k
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Answer: Answer: Cell Ranger count pipeline: use files with same name as input
3.1 years ago by swbarnes2 14k
1
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0
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1.3k
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Answer: Answer: FASTQ to VCF pipeline question
3.1 years ago by swbarnes2 14k
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1
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4.4k
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Comment: Comment: Rsubread FeatureCounts return 0.0% assigned
3.1 years ago by swbarnes2 14k
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0
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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4.4k
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Comment: Comment: Rsubread FeatureCounts return 0.0% assigned
3.1 years ago by swbarnes2 14k
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0
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1.4k
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Comment: Comment: obtaining unique identifier for a sample from fastq files
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: How to find newline character in fastq file? Is it essential to remove them?
3.1 years ago by swbarnes2 14k
0
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1
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1.4k
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Comment: Comment: obtaining unique identifier for a sample from fastq files
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: How to find newline character in fastq file? Is it essential to remove them?
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
0
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1
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3.1k
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Answer: Answer: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
3.1 years ago by swbarnes2 14k
1
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1
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1.1k
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Answer: Answer: cellranger count output does not give all genes.
3.1 years ago by swbarnes2 14k
2
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1.5k
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Answer: Answer: lncRNA quantification featurecounts
3.1 years ago by swbarnes2 14k
2
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0
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1.7k
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Comment: Comment: Why my reads mapping rate extremely low
3.1 years ago by swbarnes2 14k
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0
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2.7k
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Comment: Comment: Venn Diagram and Heatmap with RNA seq Data
3.1 years ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Batch effect that is same as main factor
3.1 years ago by swbarnes2 14k
2,066 results • Page 11 of 42
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