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Answer: Answer: RNA Seq Paired End High Duplication Rate
5 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
5 months ago by swbarnes2 14k
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2
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1.1k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
5 months ago by swbarnes2 14k
2
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1
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1.1k
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Answer: Answer: RNA-seq differentially expressed genes (DEGs) with low fold change values
5 months ago by swbarnes2 14k
1
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1
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914
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Comment: Comment: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
5 months ago by swbarnes2 14k
2
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0
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455
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Answer: Answer: Help me with Heatmap
updated 5 months ago by 12k • written 5 months ago by 14k
6
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914
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Answer: Answer: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
6 months ago by swbarnes2 14k
0
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1
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574
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Answer: Answer: Design for complex RNA-Seq experiment using Deseq2
6 months ago by swbarnes2 14k
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1.8k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
6 months ago by swbarnes2 14k
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1.8k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
6 months ago by swbarnes2 14k
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1.0k
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
6 months ago by swbarnes2 14k
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430
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Comment: Comment: Differentail gene expression results
6 months ago by swbarnes2 14k
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621
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
6 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
6 months ago by swbarnes2 14k
0
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1
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610
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
6 months ago by swbarnes2 14k
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0
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801
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
6 months ago by swbarnes2 14k
0
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1
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826
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
6 months ago by swbarnes2 14k
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0
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801
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
6 months ago by swbarnes2 14k
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598
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Answer: Answer: Sequence read length shorter than flow cell specification
6 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: PCA plot (Suggestions Needed)
7 months ago by swbarnes2 14k
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1
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1.7k
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Comment: Comment: Adding CB tag to bam file
7 months ago by swbarnes2 14k
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0
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1.1k
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Comment: Comment: PCA plot (Suggestions Needed)
7 months ago by swbarnes2 14k
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0
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1.1k
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Comment: Comment: PCA plot (Suggestions Needed)
7 months ago by swbarnes2 14k
0
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1
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931
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Comment: Comment: To get p-values for the TPM
7 months ago by swbarnes2 14k
1
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0
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766
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Comment: Comment: Should I use unpaired reads from trimmomatic
7 months ago by swbarnes2 14k
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0
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604
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Answer: Answer: from row count to tpm
7 months ago by swbarnes2 14k
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1
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857
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Comment: Comment: Marking duplicates using UMIs
7 months ago by swbarnes2 14k
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0
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781
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Comment: Comment: Free/open source 23andme-like analysis
7 months ago by swbarnes2 14k
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0
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1.9k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
7 months ago by swbarnes2 14k
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1
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1.7k
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Comment: Comment: Adding CB tag to bam file
7 months ago by swbarnes2 14k
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0
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1.0k
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Comment: Comment: RNA seq differential expression analysis
7 months ago by swbarnes2 14k
0
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1
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1.7k
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Answer: Answer: Adding CB tag to bam file
7 months ago by swbarnes2 14k
2
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1
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1.2k
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
7 months ago by swbarnes2 14k
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0
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1.1k
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
7 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
7 months ago by swbarnes2 14k
0
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0
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740
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
7 months ago by swbarnes2 14k
1
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0
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679
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 months ago by swbarnes2 14k
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0
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478
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
8 months ago by swbarnes2 14k
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0
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476
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Answer: Answer: Detecting viruses in human rna seq data
8 months ago by swbarnes2 14k
1
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1
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603
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
8 months ago by swbarnes2 14k
2
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0
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1.2k
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
8 months ago by swbarnes2 14k
0
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0
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864
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Comment: Comment: RNA_seq
8 months ago by swbarnes2 14k
0
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1
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864
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Answer: Answer: RNA_seq
8 months ago by swbarnes2 14k
1
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0
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620
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
8 months ago by swbarnes2 14k
2
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0
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590
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
8 months ago by swbarnes2 14k
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1
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894
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Answer: Answer: RNA Seq Sample Outlier
8 months ago by swbarnes2 14k
1
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1
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754
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
8 months ago by swbarnes2 14k
1
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1
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1.2k
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
8 months ago by swbarnes2 14k
2
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1
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630
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Answer: Answer: Single cell rna sequencing analysis using R help
8 months ago by swbarnes2 14k
3
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0
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729
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
8 months ago by swbarnes2 14k
2,066 results • Page 2 of 42
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