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370
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Answer: Answer: biological replicate in STAR command
8 months ago by swbarnes2 14k
1
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653
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Answer: Answer: PCA plot analysis
8 months ago by swbarnes2 14k
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1
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666
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
9 months ago by swbarnes2 14k
2
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498
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Comment: Comment: Getting less DE genes when incorporating all samples
9 months ago by swbarnes2 14k
1
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651
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Comment: Comment: Count table statistical analysis
9 months ago by swbarnes2 14k
1
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1
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968
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 months ago by swbarnes2 14k
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968
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 months ago by swbarnes2 14k
1
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934
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Comment: Comment: Three fastq files
9 months ago by swbarnes2 14k
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658
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Comment: Comment: Differential gene expression design using Deseq2
9 months ago by swbarnes2 14k
2
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1
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1.6k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
9 months ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
9 months ago by swbarnes2 14k
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819
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Answer: Answer: Help interpreting Samtools Flagstat results
10 months ago by swbarnes2 14k
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675
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
10 months ago by swbarnes2 14k
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1
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675
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
10 months ago by swbarnes2 14k
0
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0
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949
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Comment: Comment: No tumour cells in clustering of tumor sample?!
10 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: DESeq2 heatmap with low baseMean values
10 months ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: DESeq2 heatmap with low baseMean values
10 months ago by swbarnes2 14k
2
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564
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
10 months ago by swbarnes2 14k
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496
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Answer: Answer: Strand information from reverse stranded RNA-seq
11 months ago by swbarnes2 14k
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838
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Comment: Comment: bcl2fastq problems with the yield
11 months ago by swbarnes2 14k
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1
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838
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Answer: Answer: bcl2fastq problems with the yield
11 months ago by swbarnes2 14k
1
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1
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977
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
11 months ago by swbarnes2 14k
1
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0
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717
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
11 months ago by swbarnes2 14k
1
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528
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Answer: Answer: Bulk and Single Cell RNA-seq online course
11 months ago by swbarnes2 14k
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1.2k
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Answer: Answer: STAR ALIGNMENT
12 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: STAR ALIGNMENT
12 months ago by swbarnes2 14k
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1
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1.5k
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
12 months ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
12 months ago by swbarnes2 14k
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1.0k
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
12 months ago by swbarnes2 14k
1
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1.3k
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Comment: Comment: deal with PCA and my samples
12 months ago by swbarnes2 14k
2
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0
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977
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Answer: Answer: batch correction in DESeq2
12 months ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
13 months ago by swbarnes2 14k
1
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1
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2.1k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
13 months ago by swbarnes2 14k
0
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1
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805
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
13 months ago by swbarnes2 14k
0
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0
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609
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Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
13 months ago by swbarnes2 14k
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1.0k
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
13 months ago by swbarnes2 14k
0
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1
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1.0k
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Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
13 months ago by swbarnes2 14k
0
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0
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663
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Comment: Comment: Use SAM files in ref_map.pl
13 months ago by swbarnes2 14k
0
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0
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846
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
13 months ago by swbarnes2 14k
1
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1
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1.1k
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Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
14 months ago by swbarnes2 14k
1
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1
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1.0k
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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
14 months ago by swbarnes2 14k
1
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1
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1.4k
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Comment: Comment: Adding a control sample to bulk RNA-seq
14 months ago by swbarnes2 14k
0
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0
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931
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
14 months ago by swbarnes2 14k
5
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1
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1.4k
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Answer: Answer: Adding a control sample to bulk RNA-seq
14 months ago by swbarnes2 14k
1
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0
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775
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
14 months ago by swbarnes2 14k
2
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0
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716
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
14 months ago by swbarnes2 14k
0
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0
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692
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Answer: Answer: sequencing machines output files layout
14 months ago by swbarnes2 14k
0
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1
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671
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Answer: Answer: DESeqDataSetFromMatrix error
14 months ago by swbarnes2 14k
0
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0
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563
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Answer: Answer: Deseq2
14 months ago by swbarnes2 14k
0
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1
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730
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Comment: Comment: htseq-count reports count values for deleted genes
14 months ago by swbarnes2 14k
2,066 results • Page 3 of 42
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