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Comment: Comment: Is there anyway to cancel CPM normalization?
19 months ago by swbarnes2 14k
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1
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1.3k
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Answer: Answer: Is there anyway to cancel CPM normalization?
19 months ago by swbarnes2 14k
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1.7k
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Comment: Comment: DESeq2 multiple conditions, time points and sample types
19 months ago by swbarnes2 14k
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1
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6.4k
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Answer: Answer: How Can I Compare Differential Expression Data From Mouse And Human?
19 months ago by swbarnes2 14k
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959
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Answer: Answer: Detecting heterozygous deletions in NGS sequence data
19 months ago by swbarnes2 14k
2
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1.1k
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Comment: Comment: trimmomatic and STAR alignments
19 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: How to tell which exon does a variant located?
19 months ago by swbarnes2 14k
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1
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1.4k
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Answer: Answer: Big BCV (Biological Coefficient of Variation) - no sense to continue the analysi
20 months ago by swbarnes2 14k
1
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0
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1.1k
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Answer: Answer: How to combine different "groups" in DESeq2 constrast
20 months ago by swbarnes2 14k
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0
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807
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Comment: Comment: HTseq no features
20 months ago by swbarnes2 14k
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1
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805
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Answer: Answer: cellranger outcome
20 months ago by swbarnes2 14k
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0
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696
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Comment: Comment: DESeq2
20 months ago by swbarnes2 14k
2
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4.3k
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Answer: Answer: Batch effect in integrated RNA-seq analysis
21 months ago by swbarnes2 14k
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944
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Comment: Comment: want the codes for Deseq2 to perform DEGs.
21 months ago by swbarnes2 14k
0
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1
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7.2k
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Comment: Comment: Get TPM from RNA counts and gene length?
21 months ago by swbarnes2 14k
0
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1
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7.2k
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Comment: Comment: Get TPM from RNA counts and gene length?
21 months ago by swbarnes2 14k
0
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1
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909
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Comment: Comment: sRNA seq analysis after trimming adapter
21 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Extract unmapped reads AND reads covering chromosome 6 from a bam file?
21 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
21 months ago by swbarnes2 14k
0
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1
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1.2k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
21 months ago by swbarnes2 14k
0
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1
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1.2k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
21 months ago by swbarnes2 14k
0
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1
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1.0k
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Answer: Answer: Samtools unmapped reads
21 months ago by swbarnes2 14k
1
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0
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2.1k
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Comment: Comment: Mapped reads not mapping to a real sequence?
21 months ago by swbarnes2 14k
2
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2
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1.7k
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Comment: Comment: Question about RNA-Seq data alignment
updated 21 months ago by 85k • written 21 months ago by 14k
1
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0
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1.7k
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Answer: Answer: Question about RNA-Seq data alignment
21 months ago by swbarnes2 14k
0
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1
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1.5k
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Answer: Answer: Samtools mapped and unmapped flags, what is the difference between the flags?
21 months ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: Mapped reads not mapping to a real sequence?
21 months ago by swbarnes2 14k
1
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0
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1.9k
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Comment: Comment: RNAseq for DE purpose
22 months ago by swbarnes2 14k
2
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0
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721
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Comment: Comment: Analyzing bulk RNA-seq
22 months ago by swbarnes2 14k
1
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1
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1.4k
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Comment: Comment: How to change every third line in a fastq library
22 months ago by swbarnes2 14k
4
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1
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1.2k
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Answer: Answer: Reads are marked as full of mismatches in IGV, but cigar string shows full lengt
22 months ago by swbarnes2 14k
1
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1
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1.8k
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Answer: Answer: RNA-seq library size - significant sample discrepency
22 months ago by swbarnes2 14k
1
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0
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4.1k
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Answer: Answer: STAR aligner can't map too short reads
22 months ago by swbarnes2 14k
1
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0
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1.1k
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Answer: Answer: Is DeSeq2 or EdgeR better for differential expression of QuantSeq data?
22 months ago by swbarnes2 14k
0
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0
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791
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Comment: Comment: Can´t acces Biomart via R anymore
22 months ago by swbarnes2 14k
1
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0
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1.9k
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Comment: Comment: How to configure a data set with mouse data to one with human gene names using a
22 months ago by swbarnes2 14k
0
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1
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1.8k
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Comment: Comment: how to get fastq file from cellranger?
23 months ago by swbarnes2 14k
0
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1
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1.8k
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Comment: Comment: how to get fastq file from cellranger?
23 months ago by swbarnes2 14k
1
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2
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1.1k
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Comment: Comment: drawing Venn graph
23 months ago by swbarnes2 14k
0
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1
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1.1k
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Comment: Comment: drawing Venn graph
23 months ago by swbarnes2 14k
1
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2
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926
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Answer: Answer: RNA sequencing analysis
23 months ago by swbarnes2 14k
0
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1
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1.2k
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Comment: Comment: Human transcriptome STAR multi-mapped problem
23 months ago by swbarnes2 14k
0
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0
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1.1k
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Answer: Answer: Good practices for RNA-seq (2x50, 2x75, 2x100) aligment with STAR + RSEM
23 months ago by swbarnes2 14k
3
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1
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1.4k
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Answer: Answer: FPKM file differentilly gene anaylsis
23 months ago by swbarnes2 14k
1
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0
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611
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Answer: Answer: Why does `bowtie` only find perfect matches even when specifying mismatches? (ie
23 months ago by swbarnes2 14k
1
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0
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3.1k
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Comment: Comment: Transform Data into DNA picture
23 months ago by swbarnes2 14k
2
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2
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3.1k
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Comment: Comment: Transform Data into DNA picture
23 months ago by swbarnes2 14k
0
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0
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1.0k
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Comment: Comment: Manually order the set fails in UpsetR
23 months ago by swbarnes2 14k
0
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1
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1.0k
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Comment: Comment: Manually order the set fails in UpsetR
23 months ago by swbarnes2 14k
0
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1
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3.1k
views
Comment: Comment: How to find rna strand direction before alignment?
23 months ago by swbarnes2 14k
2,066 results • Page 5 of 42
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