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Answer: Answer: How to find rna strand direction before alignment?
23 months ago by swbarnes2 14k
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3.1k
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Comment: Comment: Transform Data into DNA picture
23 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: STAR Aligment Running Problem
23 months ago by swbarnes2 14k
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1.5k
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Comment: Comment: Aligning fastq files using STAR
24 months ago by swbarnes2 14k
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1.5k
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Comment: Comment: Aligning fastq files using STAR
24 months ago by swbarnes2 14k
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1.6k
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Comment: Comment: Box plots with logFC values
24 months ago by swbarnes2 14k
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3.0k
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Comment: Comment: Different featureCounts data using GTF annotation file from two different source
24 months ago by swbarnes2 14k
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992
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Comment: Comment: Gene Tracks from 10x Data
24 months ago by swbarnes2 14k
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992
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Answer: Answer: Gene Tracks from 10x Data
24 months ago by swbarnes2 14k
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1.8k
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Comment: Comment: why do i get much more significant genes and wierd volcano plot with DESeq2 for
24 months ago by swbarnes2 14k
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1
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1.8k
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Comment: Comment: why do i get much more significant genes and wierd volcano plot with DESeq2 for
24 months ago by swbarnes2 14k
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1.5k
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Answer: Answer: Compare two RNA-Seq log2fc tables
24 months ago by swbarnes2 14k
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1.5k
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Comment: Comment: Compare two RNA-Seq log2fc tables
24 months ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Subscript out of bounds in plotcounts in DESeq2
2.0 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
2.0 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
2.0 years ago by swbarnes2 14k
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1.6k
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Comment: Comment: samtools index: Numerical result out of range for both .bai and .csi
2.0 years ago by swbarnes2 14k
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862
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Answer: Answer: What kind of statistics to use to compare logFold values?
2.0 years ago by swbarnes2 14k
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2.0k
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Comment: Comment: featureCounts paired end reads wrongly assigned on the single end mode
2.0 years ago by swbarnes2 14k
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2.0k
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Answer: Answer: featureCounts paired end reads wrongly assigned on the single end mode
2.0 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Error in DESeqDataSetFromHTSeqCount
2.0 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Error in DESeqDataSetFromHTSeqCount
2.0 years ago by swbarnes2 14k
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1
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1.3k
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Answer: Answer: Aligning reads from mouse samples that express 1 human gene
2.0 years ago by swbarnes2 14k
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1.1k
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Comment: Comment: What does PCA results signify?
2.0 years ago by swbarnes2 14k
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1
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822
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Comment: Comment: How to custom colors in plot_ordination?
2.0 years ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.0 years ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.0 years ago by swbarnes2 14k
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1
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1.6k
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Answer: Answer: Interpreting time-series analysis with DESeq2 output
2.0 years ago by swbarnes2 14k
1
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1.2k
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Answer: Answer: Pan-cancer RNA-seq data normalization
2.1 years ago by swbarnes2 14k
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802
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Comment: Comment: plotCount for multiple genes using z scores
2.1 years ago by swbarnes2 14k
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910
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Comment: Comment: Deseq2 using 2x2 design
2.1 years ago by swbarnes2 14k
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1.1k
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Answer: Answer: DESeq2 MA plot - linear relationship for pooled amplicons
2.1 years ago by swbarnes2 14k
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1
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3.8k
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Comment: Comment: Confused about % of mapped and unmapped reads output from STAR aligner
2.1 years ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: RNA-Seq Reads Count
2.1 years ago by swbarnes2 14k
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1
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3.8k
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Comment: Comment: Confused about % of mapped and unmapped reads output from STAR aligner
2.1 years ago by swbarnes2 14k
0
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1
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3.8k
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Answer: Answer: Confused about % of mapped and unmapped reads output from STAR aligner
2.1 years ago by swbarnes2 14k
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1
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2.1k
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.1 years ago by swbarnes2 14k
1
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4.0k
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Comment: Comment: DESeq2 design formula considerations
2.1 years ago by swbarnes2 14k
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2.8k
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Comment: Comment: Confused with output of STAR aligner for paired end reads and need advice on clo
2.1 years ago by swbarnes2 14k
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0
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2.6k
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Answer: Answer: What are Tiles in Sequencing
2.1 years ago by swbarnes2 14k
1
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1
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1.8k
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Answer: Answer: Multi factor analysis in DESeq2 and design formula
2.1 years ago by swbarnes2 14k
1
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1
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2.8k
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Answer: Answer: Confused with output of STAR aligner for paired end reads and need advice on clo
2.1 years ago by swbarnes2 14k
2
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1
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969
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Answer: Answer: Log fold change from rlog
2.1 years ago by swbarnes2 14k
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0
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1.9k
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Answer: Answer: Quantseq 3' seq alignment with kallisto
2.1 years ago by swbarnes2 14k
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1.9k
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Comment: Comment: Quantseq 3' seq alignment with kallisto
2.1 years ago by swbarnes2 14k
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1
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1.9k
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Comment: Comment: Quantseq 3' seq alignment with kallisto
2.1 years ago by swbarnes2 14k
2
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1
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1.3k
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Answer: Answer: Can I perform DE analysis with Seurat if I only have one sample per condition?
2.1 years ago by swbarnes2 14k
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1.1k
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Comment: Comment: Aligner logic
2.1 years ago by swbarnes2 14k
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1.1k
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Answer: Answer: Aligner logic
2.1 years ago by swbarnes2 14k
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1.6k
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Answer: Answer: convert a list of plotly plots to an HTML output
2.1 years ago by swbarnes2 14k
2,066 results • Page 6 of 42
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