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2.6k
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Comment: Comment: bcl2fastq dumps most of the reads as undetermined
2.1 years ago by swbarnes2 14k
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2.4k
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Comment: Comment: What sequencing/alignment artifact is this?
2.1 years ago by swbarnes2 14k
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2.4k
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Comment: Comment: What sequencing/alignment artifact is this?
2.1 years ago by swbarnes2 14k
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837
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Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
2.1 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Why I get error while performing DeSeq2 ?
2.1 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Why I get error while performing DeSeq2 ?
2.1 years ago by swbarnes2 14k
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2.3k
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Comment: Comment: Demultiplex fastq files
2.1 years ago by swbarnes2 14k
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823
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Answer: Answer: Decrease the low counts
2.2 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: FastQ: quality string length is not equal to sequence length
2.2 years ago by swbarnes2 14k
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0
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787
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Answer: Answer: Generating DE genes of a time series
2.2 years ago by swbarnes2 14k
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2.0k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
2.2 years ago by swbarnes2 14k
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2.2k
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Comment: Comment: From fastq files to fasta
2.2 years ago by swbarnes2 14k
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4.4k
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Answer: Answer: Multiple conditions DESeq2
2.2 years ago by swbarnes2 14k
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636
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Answer: Answer: Forward Strand Or Reverse Strand alignment
2.2 years ago by swbarnes2 14k
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0
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847
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Comment: Comment: Confused about which comparison to give a more accurate answer in RNA seq experi
2.2 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
2.2 years ago by swbarnes2 14k
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0
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938
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Answer: Answer: RNA Seq - Combining & Normalization of 3-library samples from two different sequ
2.2 years ago by swbarnes2 14k
2
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1
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847
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Answer: Answer: Confused about which comparison to give a more accurate answer in RNA seq experi
2.2 years ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Colors to Plotting PCA (2D) by R
2.2 years ago by swbarnes2 14k
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1.0k
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Comment: Comment: Identifying adapter sequence to trim for Illumina IIx data
2.2 years ago by swbarnes2 14k
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647
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Comment: Comment: Alternate DESeq2 designs to model donor variance
2.2 years ago by swbarnes2 14k
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1.2k
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Comment: Comment: How to extract the results table for specific samples names after normalization
2.2 years ago by swbarnes2 14k
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2
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647
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Alternate DESeq2 designs to model donor variance
DESeq2 PCA
2.2 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: How DESeq2 formula correction works?
2.2 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: How DESeq2 formula correction works?
2.2 years ago by swbarnes2 14k
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1.4k
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Answer: Answer: How DESeq2 formula correction works?
2.2 years ago by swbarnes2 14k
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2.2k
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Answer: Answer: paired-end reads, idxstats, and samtools and grep
2.2 years ago by swbarnes2 14k
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2.0k
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Comment: Comment: Converting BAM to FASTQ...to new reference genome
2.2 years ago by swbarnes2 14k
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0
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2.0k
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Comment: Comment: Converting BAM to FASTQ...to new reference genome
2.2 years ago by swbarnes2 14k
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1
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1.8k
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Comment: Comment: Count specific sequences in a .fasta file
2.2 years ago by swbarnes2 14k
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1
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2.0k
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Comment: Comment: Converting BAM to FASTQ...to new reference genome
2.2 years ago by swbarnes2 14k
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1
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1.0k
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Answer: Answer: STAR aligned my .fastq reads to the whole genome as opposed to only to the codin
2.2 years ago by swbarnes2 14k
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0
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655
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Answer: Answer: How do I filter out reads where Read 2 doesn't map to the end of a fasta sequenc
2.3 years ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: Retaining parts of the header file in multiple fasta files.
2.3 years ago by swbarnes2 14k
1
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1
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883
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Answer: Answer: mapping paired end data
2.3 years ago by swbarnes2 14k
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0
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545
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Answer: Answer: WES Wrong Index Sequencing
2.3 years ago by swbarnes2 14k
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0
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3.5k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.3 years ago by swbarnes2 14k
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1
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1.2k
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Answer: Answer: Time course RNA seq with DESEq2
2.3 years ago by swbarnes2 14k
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1
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1.2k
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Answer: Answer: Count expression of 10x scRNA-seq after UMI extraction
2.3 years ago by swbarnes2 14k
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0
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1.2k
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Comment: Comment: Convert fasta to Fastq/bam
2.3 years ago by swbarnes2 14k
0
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1
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3.5k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.3 years ago by swbarnes2 14k
1
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0
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896
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Answer: Answer: Does comparison between two groups still make sense if PCA plot suggest no diffe
2.3 years ago by swbarnes2 14k
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1
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3.6k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.3 years ago by swbarnes2 14k
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0
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675
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Comment: Comment: Demultiplexing paired-end illumina data with separated R1 file, R2 file and inde
2.3 years ago by swbarnes2 14k
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1
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1.1k
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Answer: Answer: Help with adding variables to PCA
2.3 years ago by swbarnes2 14k
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1
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1.3k
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Answer: Answer: merging data; remove extra rows
2.3 years ago by swbarnes2 14k
2
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1
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by swbarnes2 14k
3
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1
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1.9k
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Answer: Answer: DEXSeq - No Exon Counts
2.3 years ago by swbarnes2 14k
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0
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1.9k
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Comment: Comment: DEXSeq - No Exon Counts
2.3 years ago by swbarnes2 14k
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0
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879
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Answer: Answer: Clustering analysis for scRNA-seq
2.3 years ago by swbarnes2 14k
2,066 results • Page 7 of 42
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