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Comment: Comment: How to select isoform which shows the highest expression within a gene?
2.3 years ago by swbarnes2 14k
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949
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Comment: Comment: Error when I try to change rownames in my list
2.3 years ago by swbarnes2 14k
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686
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Comment: Comment: Plotting multiple genes across 4- species
2.3 years ago by swbarnes2 14k
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3.8k
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Comment: Comment: How to get TPM values from the STAR output?
2.3 years ago by swbarnes2 14k
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949
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Answer: Answer: Error when I try to change rownames in my list
2.3 years ago by swbarnes2 14k
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3.8k
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Comment: Comment: How to get TPM values from the STAR output?
2.3 years ago by swbarnes2 14k
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3.8k
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Comment: Comment: How to get TPM values from the STAR output?
2.3 years ago by swbarnes2 14k
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3.8k
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Answer: Answer: How to get TPM values from the STAR output?
2.4 years ago by swbarnes2 14k
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587
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Answer: Answer: Expected counts in GTEX
2.4 years ago by swbarnes2 14k
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1.3k
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Answer: Answer: BWA MEM/Can BWA use bam file to re-align it to the new ref.fa?
2.4 years ago by swbarnes2 14k
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Answer: Answer: sam files
2.4 years ago by swbarnes2 14k
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842
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Comment: Comment: Error to create a dds DESeq2 object.
2.4 years ago by swbarnes2 14k
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842
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Comment: Comment: Error to create a dds DESeq2 object.
2.4 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: RNASeq data has 3 files R1, R2 and R3, which one is the barcode file?
2.4 years ago by swbarnes2 14k
2
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0
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776
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Answer: Answer: BWA MEM Multiple Primary Alignments
2.4 years ago by swbarnes2 14k
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2.8k
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Answer: Answer: Supplementary alignments in BAM-file
2.4 years ago by swbarnes2 14k
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2
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1.1k
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Comment: Comment: BWA-mem - Different alignment numbers to same reference sequence
2.4 years ago by swbarnes2 14k
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1.2k
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Comment: Comment: SCRNA analysis
2.4 years ago by swbarnes2 14k
3
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2
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1.9k
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Comment: Comment: how many sequences are in genome file
2.4 years ago by swbarnes2 14k
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603
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Comment: Comment: understanding similarity in different sra files
2.5 years ago by swbarnes2 14k
1
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1
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659
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Answer: Answer: Mouse SNPs to genes
2.5 years ago by swbarnes2 14k
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1.1k
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Comment: Comment: Counts from STAR with stranded protocol
2.5 years ago by swbarnes2 14k
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2
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1.2k
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Answer: Answer: Best practice for merging across lanes
2.5 years ago by swbarnes2 14k
1
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0
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581
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Answer: Answer: Align unmapped reads to reference vector sequence
2.5 years ago by swbarnes2 14k
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1
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1.1k
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Answer: Answer: Counts from STAR with stranded protocol
2.5 years ago by swbarnes2 14k
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1.0k
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Comment: Comment: DESeq2 use of factors for colData
2.5 years ago by swbarnes2 14k
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0
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2.4k
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Comment: Comment: Difference in total gene counts between samples
2.5 years ago by swbarnes2 14k
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1
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1.0k
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Answer: Answer: DESeq2 use of factors for colData
2.5 years ago by swbarnes2 14k
1
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1
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2.4k
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Comment: Comment: Difference in total gene counts between samples
2.5 years ago by swbarnes2 14k
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1
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2.4k
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Comment: Comment: Difference in total gene counts between samples
2.5 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: How to create kallisto index that does not include ribosomal genes
2.5 years ago by swbarnes2 14k
0
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0
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2.2k
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Comment: Comment: Making a pheatmap legend with superscripts
2.5 years ago by swbarnes2 14k
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1
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2.2k
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Comment: Comment: Making a pheatmap legend with superscripts
2.5 years ago by swbarnes2 14k
1
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1
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715
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Answer: Answer: RNA-seq Differential analysis general question of interpreting data results.
2.5 years ago by swbarnes2 14k
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5
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2.2k
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Making a pheatmap legend with superscripts
pheatmap
updated 2.5 years ago by 44k • written 2.5 years ago by 14k
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2.4k
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Comment: Comment: Difference in total gene counts between samples
2.5 years ago by swbarnes2 14k
0
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0
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1.1k
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Comment: Comment: When identifying DEGs, should all the libraries be normalized together?
2.5 years ago by swbarnes2 14k
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1
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1.1k
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Answer: Answer: When identifying DEGs, should all the libraries be normalized together?
2.5 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: unsorting a bam file
2.5 years ago by swbarnes2 14k
0
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0
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597
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Answer: Answer: P values for large sample size comparisons
2.5 years ago by swbarnes2 14k
2
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0
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975
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Answer: Answer: Deciphering cigar strings
2.5 years ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: DESeq after ComBat_seq
2.5 years ago by swbarnes2 14k
2
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1
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1.4k
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Answer: Answer: unsorting a bam file
2.5 years ago by swbarnes2 14k
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1
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577
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Comment: Comment: igv and bam file
2.5 years ago by swbarnes2 14k
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0
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1.4k
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Answer: Answer: How to perform VST on my filtered counts data
2.6 years ago by swbarnes2 14k
0
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0
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1.3k
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Comment: Comment: Extract counts from paired end bam files
2.6 years ago by swbarnes2 14k
1
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0
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627
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Comment: Comment: Cellranger count fails at chunks_read stage
2.6 years ago by swbarnes2 14k
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2.7k
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Comment: Comment: STAR alignment error: unrecognized parameter name "genomeType" in input "genomeP
2.6 years ago by swbarnes2 14k
0
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1
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2.7k
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Answer: Answer: STAR alignment error: unrecognized parameter name "genomeType" in input "genomeP
2.6 years ago by swbarnes2 14k
3
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2
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3.7k
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
2.6 years ago by swbarnes2 14k
2,066 results • Page 8 of 42
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