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Comment: Comment: Why so much variability in RNA-seq technical replicates?
2.6 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: Why so much variability in RNA-seq technical replicates?
2.6 years ago by swbarnes2 14k
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1.2k
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Answer: Answer: Help with DESeq2 output
2.6 years ago by swbarnes2 14k
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512
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Answer: Answer: DESeqg design formula options
2.6 years ago by swbarnes2 14k
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Comment: Comment: How to load .txt files to R and make Seurat object ?
2.6 years ago by swbarnes2 14k
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833
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Answer: Answer: DGE adjusted p-value
2.6 years ago by swbarnes2 14k
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715
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Comment: Comment: May I run scRNA-seq data in Seurat without barcode file?
2.7 years ago by swbarnes2 14k
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1.6k
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Answer: Answer: Compare RNA seq mapping results from STAR and BWA in R
2.7 years ago by swbarnes2 14k
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2.8k
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Comment: Comment: I wonder if someone please explain what secondary, supplementary, duplicates and
2.7 years ago by swbarnes2 14k
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2.3k
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Answer: Answer: highlight subset of cells on tSNE plot
2.7 years ago by swbarnes2 14k
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883
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Answer: Answer: Help for PCA analysis
2.7 years ago by swbarnes2 14k
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Comment: Comment: How to compare differential expression of same genes between two groups?
2.7 years ago by swbarnes2 14k
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1.4k
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Comment: Comment: CellRanger - No input FASTQs were found for the requested parameters
2.7 years ago by swbarnes2 14k
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1.4k
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Answer: Answer: RC an entire bam file?
2.7 years ago by swbarnes2 14k
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529
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Answer: Answer: sample split in multiple flowcells and lanes
2.7 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: How to compare differential expression of same genes between two groups?
2.7 years ago by swbarnes2 14k
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0
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1.7k
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Comment: Comment: How to compare differential expression of same genes between two groups?
2.7 years ago by swbarnes2 14k
0
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0
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1.7k
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Comment: Comment: How to compare differential expression of same genes between two groups?
2.7 years ago by swbarnes2 14k
0
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1
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1.7k
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Comment: Comment: How to compare differential expression of same genes between two groups?
2.7 years ago by swbarnes2 14k
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1.0k
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Comment: Comment: Generating Dataset for DESeq2 Analysis Issue
2.7 years ago by swbarnes2 14k
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1.0k
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Comment: Comment: How to deal with batch effects of multiple datasets?
2.7 years ago by swbarnes2 14k
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566
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Answer: Answer: Map hg19 whole exome data to exon number by gene
2.7 years ago by swbarnes2 14k
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775
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Answer: Answer: Creating gene counts for differential gene expression analysis
2.7 years ago by swbarnes2 14k
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Comment: Comment: Loop through columns to generate PCA from DESeq2 data
2.7 years ago by swbarnes2 14k
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787
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Comment: Comment: I have RAW Illumina Paired-end sequence in FASTQ format. Can someone please guid
2.7 years ago by swbarnes2 14k
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921
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Comment: Comment: PCA does not show distinction in groups
2.7 years ago by swbarnes2 14k
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2.0k
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Comment: Comment: bcl2fastq error with RunInfo.xml
2.7 years ago by swbarnes2 14k
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2.3k
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Answer: Answer: Change chromosome notation in bam file
2.7 years ago by swbarnes2 14k
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921
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Answer: Answer: PCA does not show distinction in groups
2.7 years ago by swbarnes2 14k
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2.9k
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
2.7 years ago by swbarnes2 14k
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1.0k
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Comment: Comment: How to get rid of mis-assigned reads without having bcl files or index informati
2.7 years ago by swbarnes2 14k
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939
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Answer: Answer: RNAseq and future analysis
2.8 years ago by swbarnes2 14k
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2.5k
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Comment: Comment: What does an amino acid sequence that does not start with methionine mean?
2.8 years ago by swbarnes2 14k
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2.5k
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Answer: Answer: What does an amino acid sequence that does not start with methionine mean?
2.8 years ago by swbarnes2 14k
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0
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603
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Answer: Answer: How do i perform DGE if based on PCA the samples are separated along PC2 and not
2.8 years ago by swbarnes2 14k
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0
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857
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Answer: Answer: The Difference Between Genome Reference(scRNAseq) And Transcriptome Reference(bu
2.8 years ago by swbarnes2 14k
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0
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750
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Comment: Comment: raw data normalization
2.8 years ago by swbarnes2 14k
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0
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1.6k
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Answer: Answer: How can I trim the primer and mask it with the original primer sequences?
2.8 years ago by swbarnes2 14k
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2
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1.1k
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Answer: Answer: Extract gene related reads from a whole run
2.8 years ago by swbarnes2 14k
2
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0
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680
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Answer: Answer: Genome sequencing clinical interpretation help
2.8 years ago by swbarnes2 14k
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1.1k
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Answer: Answer: DESeq2 count table columns do not normalize
2.8 years ago by swbarnes2 14k
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1.6k
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Comment: Comment: How does BWA handle duplications?
2.8 years ago by swbarnes2 14k
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1.6k
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Answer: Answer: How does BWA handle duplications?
2.8 years ago by swbarnes2 14k
1
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1
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1.8k
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Comment: Comment: Filter out genes less than 10 count from DESeq2 does not work
2.8 years ago by swbarnes2 14k
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1.5k
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Answer: Answer: DESeq2 Error in checkFullRank(modelMatrix)?
2.8 years ago by swbarnes2 14k
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1
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6.2k
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Comment: Comment: Most data are within Undetermined.fastq, while sample files are empty
2.8 years ago by swbarnes2 14k
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1
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6.2k
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Comment: Comment: Most data are within Undetermined.fastq, while sample files are empty
2.8 years ago by swbarnes2 14k
3
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1
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6.2k
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Answer: Answer: Most data are within Undetermined.fastq, while sample files are empty
2.8 years ago by swbarnes2 14k
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1
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2.8k
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Comment: Comment: Bowtie2 no build the index
2.8 years ago by swbarnes2 14k
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1.7k
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Comment: Comment: create index for genome instead of transcriptome using Salmon
2.8 years ago by swbarnes2 14k
2,066 results • Page 9 of 42
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