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Answer: Answer: Design for complex RNA-Seq experiment using Deseq2
1 day ago by swbarnes2 14k
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724
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
2 days ago by swbarnes2 14k
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724
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
3 days ago by swbarnes2 14k
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557
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
8 days ago by swbarnes2 14k
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242
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Comment: Comment: Differentail gene expression results
11 days ago by swbarnes2 14k
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294
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
12 days ago by swbarnes2 14k
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416
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
12 days ago by swbarnes2 14k
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371
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
13 days ago by swbarnes2 14k
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493
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
15 days ago by swbarnes2 14k
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447
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
16 days ago by swbarnes2 14k
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493
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
16 days ago by swbarnes2 14k
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372
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Answer: Answer: Sequence read length shorter than flow cell specification
23 days ago by swbarnes2 14k
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768
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Comment: Comment: PCA plot (Suggestions Needed)
24 days ago by swbarnes2 14k
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961
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Comment: Comment: Adding CB tag to bam file
24 days ago by swbarnes2 14k
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768
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Comment: Comment: PCA plot (Suggestions Needed)
24 days ago by swbarnes2 14k
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768
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Comment: Comment: PCA plot (Suggestions Needed)
25 days ago by swbarnes2 14k
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616
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Comment: Comment: To get p-values for the TPM
25 days ago by swbarnes2 14k
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400
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Comment: Comment: Should I use unpaired reads from trimmomatic
25 days ago by swbarnes2 14k
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345
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Answer: Answer: from row count to tpm
27 days ago by swbarnes2 14k
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547
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Comment: Comment: Marking duplicates using UMIs
28 days ago by swbarnes2 14k
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557
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Comment: Comment: Free/open source 23andme-like analysis
29 days ago by swbarnes2 14k
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1.4k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
29 days ago by swbarnes2 14k
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1
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961
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Comment: Comment: Adding CB tag to bam file
29 days ago by swbarnes2 14k
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817
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Comment: Comment: RNA seq differential expression analysis
4 weeks ago by swbarnes2 14k
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1
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961
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Answer: Answer: Adding CB tag to bam file
4 weeks ago by swbarnes2 14k
2
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1
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734
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
4 weeks ago by swbarnes2 14k
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639
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
6 weeks ago by swbarnes2 14k
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639
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
6 weeks ago by swbarnes2 14k
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455
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
6 weeks ago by swbarnes2 14k
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449
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by swbarnes2 14k
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342
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
8 weeks ago by swbarnes2 14k
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314
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Answer: Answer: Detecting viruses in human rna seq data
8 weeks ago by swbarnes2 14k
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1
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438
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
8 weeks ago by swbarnes2 14k
2
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612
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
9 weeks ago by swbarnes2 14k
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0
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591
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Comment: Comment: RNA_seq
9 weeks ago by swbarnes2 14k
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1
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591
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Answer: Answer: RNA_seq
9 weeks ago by swbarnes2 14k
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0
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390
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
9 weeks ago by swbarnes2 14k
2
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405
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
10 weeks ago by swbarnes2 14k
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1
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570
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Answer: Answer: RNA Seq Sample Outlier
10 weeks ago by swbarnes2 14k
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447
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
10 weeks ago by swbarnes2 14k
1
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1
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529
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
10 weeks ago by swbarnes2 14k
2
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1
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340
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Answer: Answer: Single cell rna sequencing analysis using R help
10 weeks ago by swbarnes2 14k
3
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449
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
10 weeks ago by swbarnes2 14k
1
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260
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Answer: Answer: biological replicate in STAR command
11 weeks ago by swbarnes2 14k
1
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0
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418
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Answer: Answer: PCA plot analysis
11 weeks ago by swbarnes2 14k
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1
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472
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
12 weeks ago by swbarnes2 14k
2
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342
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Comment: Comment: Getting less DE genes when incorporating all samples
3 months ago by swbarnes2 14k
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0
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478
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Comment: Comment: Count table statistical analysis
3 months ago by swbarnes2 14k
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611
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
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0
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611
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
2,010 results • Page 1 of 41
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