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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
2 days ago by swbarnes2 14k
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723
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
3 days ago by swbarnes2 14k
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242
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Comment: Comment: Differentail gene expression results
11 days ago by swbarnes2 14k
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294
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
12 days ago by swbarnes2 14k
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416
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
12 days ago by swbarnes2 14k
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493
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
15 days ago by swbarnes2 14k
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493
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
16 days ago by swbarnes2 14k
1
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768
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Comment: Comment: PCA plot (Suggestions Needed)
24 days ago by swbarnes2 14k
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1
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961
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Comment: Comment: Adding CB tag to bam file
24 days ago by swbarnes2 14k
1
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768
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Comment: Comment: PCA plot (Suggestions Needed)
24 days ago by swbarnes2 14k
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0
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768
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Comment: Comment: PCA plot (Suggestions Needed)
25 days ago by swbarnes2 14k
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1
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616
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Comment: Comment: To get p-values for the TPM
25 days ago by swbarnes2 14k
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400
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Comment: Comment: Should I use unpaired reads from trimmomatic
25 days ago by swbarnes2 14k
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1
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546
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Comment: Comment: Marking duplicates using UMIs
28 days ago by swbarnes2 14k
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557
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Comment: Comment: Free/open source 23andme-like analysis
29 days ago by swbarnes2 14k
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1.4k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
29 days ago by swbarnes2 14k
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1
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961
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Comment: Comment: Adding CB tag to bam file
29 days ago by swbarnes2 14k
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0
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816
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Comment: Comment: RNA seq differential expression analysis
4 weeks ago by swbarnes2 14k
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1
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638
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
6 weeks ago by swbarnes2 14k
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454
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
6 weeks ago by swbarnes2 14k
1
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449
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by swbarnes2 14k
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0
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591
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Comment: Comment: RNA_seq
9 weeks ago by swbarnes2 14k
2
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342
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Comment: Comment: Getting less DE genes when incorporating all samples
3 months ago by swbarnes2 14k
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477
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Comment: Comment: Count table statistical analysis
3 months ago by swbarnes2 14k
1
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1
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610
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
1
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621
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Comment: Comment: Three fastq files
3 months ago by swbarnes2 14k
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0
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512
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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
2
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1
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1.2k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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487
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
4 months ago by swbarnes2 14k
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713
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Comment: Comment: No tumour cells in clustering of tumor sample?!
4 months ago by swbarnes2 14k
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0
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794
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
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1
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794
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
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0
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650
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Comment: Comment: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
1
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1
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705
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
5 months ago by swbarnes2 14k
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0
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860
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Comment: Comment: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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1
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888
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
6 months ago by swbarnes2 14k
1
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1.0k
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Comment: Comment: deal with PCA and my samples
6 months ago by swbarnes2 14k
0
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1
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1.4k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
1
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1
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1.4k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
0
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1
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628
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 months ago by swbarnes2 14k
0
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0
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778
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
7 months ago by swbarnes2 14k
0
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0
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551
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Comment: Comment: Use SAM files in ref_map.pl
7 months ago by swbarnes2 14k
0
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0
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648
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
7 months ago by swbarnes2 14k
1
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
0
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0
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753
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by swbarnes2 14k
1
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0
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595
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
8 months ago by swbarnes2 14k
0
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1
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603
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Comment: Comment: htseq-count reports count values for deleted genes
8 months ago by swbarnes2 14k
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769
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Comment: Comment: How to Add Mutations to the sequence
8 months ago by swbarnes2 14k
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0
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1.4k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by swbarnes2 14k
1,028 results • Page 1 of 21
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