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15
votes
11
replies
13k
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6 follow
What's the difference between enrichKEGG and gseKEGG
clusterprofiler KEGG
updated 2.6 years ago by ▴ 70 • written 5.1 years ago by ▴ 30
0
votes
1
reply
910
views
Comment: Comment: BED Heatmap
3.4 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.0k
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Comment: C: Convert fastqc.gz file to BED file format
4.2 years ago by ben.kunfang ▴ 30
0
votes
0
replies
788
views
How to count the paired end reads number in given regions
paired-end bam Hi-C HiC-Pro
4.2 years ago by ben.kunfang ▴ 30
0
votes
0
replies
875
views
Comment: C: How to deal with Hi-C replicates from different patients' tissue sample?
4.3 years ago by ben.kunfang ▴ 30
2
votes
2
replies
875
views
How to deal with Hi-C replicates from different patients' tissue sample?
Hi-C patient replicates
updated 4.3 years ago by ★ 7.7k • written 4.3 years ago by ▴ 30
0
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1
reply
2.7k
views
Answer: A: TPM for correlation between genes
4.4 years ago by ben.kunfang ▴ 30
0
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1
reply
1.7k
views
Comment: C: Do I have to use index with trans information for RNA-seq alignment by Hisat2?
4.7 years ago by ben.kunfang ▴ 30
2
votes
3
replies
1.7k
views
Do I have to use index with trans information for RNA-seq alignment by Hisat2?
Hisat2 RNA-Seq
updated 4.7 years ago by 101k • written 4.7 years ago by ▴ 30
0
votes
0
replies
4.4k
views
Answer: A: Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq dat
4.9 years ago by ben.kunfang ▴ 30
0
votes
0
replies
669
views
How to get the fine-mapped SNPs associated with risk loci
GWAS SNPs breast cancer fine-mapped
4.9 years ago by ben.kunfang ▴ 30
0
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0
replies
2.0k
views
Answer: A: macs2 call peak
5.1 years ago by ben.kunfang ▴ 30
0
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0
replies
13k
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Comment: C: What's the difference between enrichKEGG and gseKEGG
5.1 years ago by ben.kunfang ▴ 30
0
votes
0
replies
13k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.1 years ago by ben.kunfang ▴ 30
1
vote
0
replies
13k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.1 years ago by ben.kunfang ▴ 30
0
votes
2
replies
13k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.1 years ago by ben.kunfang ▴ 30
0
votes
0
replies
1.8k
views
Comment: C: Draw coverage plot from bed file
5.3 years ago by ben.kunfang ▴ 30
0
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1
reply
1.8k
views
Comment: C: Draw coverage plot from bed file
5.3 years ago by ben.kunfang ▴ 30
0
votes
1
reply
1.8k
views
Comment: C: Draw coverage plot from bed file
5.3 years ago by ben.kunfang ▴ 30
2
votes
6
replies
1.8k
views
Draw coverage plot from bed file
bed deeptools coverage
updated 20 months ago by 44k • written 5.3 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Comment: C: Error in peak calling using SPP package
5.3 years ago by ben.kunfang ▴ 30
1
vote
1
reply
4.4k
views
Comment: C: New ultraperformant version of SICER/epic: epic2
5.5 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.4k
views
Different parameters for macs2 to call narrow marks and broad marks?
ChIP-Seq macs2 histone modification peak
5.5 years ago by ben.kunfang ▴ 30
0
votes
0
replies
3.3k
views
Comment: C: Ideas to split peaks into subpeaks - beyond PeakSplitter
5.5 years ago by ben.kunfang ▴ 30
0
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0
replies
2.3k
views
Comment: C: Why the estimated fragment length result is different between SPP and macs2 pred
5.6 years ago by ben.kunfang ▴ 30
0
votes
0
replies
1.0k
views
how to deal with H3K4me3 and H3K4me1 overlap peaks?
ChIP-Seq macs2 peak histone modification
5.6 years ago by ben.kunfang ▴ 30
0
votes
1
reply
2.3k
views
Comment: C: Why the estimated fragment length result is different between SPP and macs2 pred
5.6 years ago by ben.kunfang ▴ 30
1
vote
4
replies
2.3k
views
Why the estimated fragment length result is different between SPP and macs2 predictd?
SPP macs2 estimate fragment length
5.6 years ago by ben.kunfang ▴ 30
0
votes
0
replies
1.9k
views
How to get the pooled-replicate narrowPeak file for IDR peak-list
IDR pooled-replicate
5.6 years ago by ben.kunfang ▴ 30
0
votes
0
replies
6.6k
views
Answer: A: understanding bamtobed output
6.9 years ago by ben.kunfang ▴ 30
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