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9
votes
13
replies
6.1k
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6 follow
converting paired end reads to single end, is this a good idea?
RNA-Seq
updated 22 months ago by 44k • written 6.8 years ago by ▴ 270
0
votes
0
replies
579
views
How to interpret exon ID?
rna-seq exon
3.4 years ago by John ▴ 270
2
votes
2
replies
1.7k
views
Google Cloud for RNA seq analysis
googlecloud gcp RNAseq Cloud
updated 3.5 years ago by 147k • written 3.5 years ago by ▴ 270
0
votes
1
reply
1.5k
views
What number I should specify for SMARTer Stranded Total RNA-Seq Kit v2 for --forward-prob in RSEM?
RNA-Seq rna-seq
updated 3.8 years ago by ▴ 60 • written 4.9 years ago by ▴ 270
0
votes
1
reply
1.2k
views
How to get actual alignment % from STAR?
RNA-Seq R
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 270
14
votes
7
replies
14k
views
How to download mm10 GTF file with the gene id and gene name using UCSC table browser?
RNA-Seq ucsc alignment
updated 4.9 years ago by ▴ 670 • written 4.9 years ago by ▴ 270
0
votes
0
replies
14k
views
Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
4.9 years ago by John ▴ 270
0
votes
1
reply
7.7k
views
Comment: C: What % of rRNA contamination is acceptable?
4.9 years ago by John ▴ 270
0
votes
1
reply
7.7k
views
Comment: C: What % of rRNA contamination is acceptable?
4.9 years ago by John ▴ 270
0
votes
1
reply
7.7k
views
Comment: C: What % of rRNA contamination is acceptable?
4.9 years ago by John ▴ 270
15
votes
15
replies
7.7k
views
What % of rRNA contamination is acceptable?
RNA-Seq rna-seq alignment
updated 2.4 years ago by 44k • written 4.9 years ago by ▴ 270
0
votes
0
replies
7.7k
views
Comment: C: What % of rRNA contamination is acceptable?
4.9 years ago by John ▴ 270
0
votes
0
replies
7.7k
views
Comment: C: What % of rRNA contamination is acceptable?
4.9 years ago by John ▴ 270
1
vote
2
replies
7.7k
views
Comment: Comment: What % of rRNA contamination is acceptable?
updated 2.4 years ago by 44k • written 4.9 years ago by ▴ 270
0
votes
1
reply
7.7k
views
Comment: Comment: What % of rRNA contamination is acceptable?
updated 2.4 years ago by 44k • written 4.9 years ago by ▴ 270
2
votes
3
replies
2.9k
views
Why EBSEQ and DEseq2 gives different number of DE genes
RNA-Seq rna-seq R alignment gene
updated 5.1 years ago by 14k • written 5.1 years ago by ▴ 270
0
votes
0
replies
2.9k
views
Comment: C: Why EBSEQ and DEseq2 gives different number of DE genes
5.1 years ago by John ▴ 270
0
votes
0
replies
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
0
votes
1
reply
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
1
vote
1
reply
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
0
votes
0
replies
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
1
vote
1
reply
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
22
votes
19
replies
5.3k
views
8 follow
edgeR gives no DE genes <0.05 FDR
R RNA-Seq software error alignment
updated 5.1 years ago by ★ 5.2k • written 5.1 years ago by ▴ 270
1
vote
0
replies
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by John ▴ 270
0
votes
1
reply
14k
views
Comment: C: How to normalize my rna seq data?
5.2 years ago by John ▴ 270
10
votes
10
replies
14k
views
How to normalize my rna seq data?
RNA-Seq Normalization
5.2 years ago by John ▴ 270
1
vote
0
replies
14k
views
Comment: C: How to normalize my rna seq data?
5.2 years ago by John ▴ 270
0
votes
1
reply
1.8k
views
Comment: C: Is it necessary to do FastQC before using RSEM?
5.2 years ago by John ▴ 270
5
votes
5
replies
1.8k
views
Is it necessary to do FastQC before using RSEM?
RNA-Seq R alignment
updated 5.2 years ago by 147k • written 5.2 years ago by ▴ 270
6
votes
7
replies
3.5k
views
How to create custom gtf annotation file?
RNA-Seq R genome
updated 5.3 years ago by ★ 1.9k • written 5.3 years ago by ▴ 270
1
vote
1
reply
3.5k
views
Comment: C: How to create custom gtf annotation file?
5.3 years ago by John ▴ 270
0
votes
0
replies
1.1k
views
Answer: A: How to Align only few transcript and get count?
5.3 years ago by John ▴ 270
1
vote
5
replies
1.1k
views
How to Align only few transcript and get count?
RNA-Seq R rna-seq next-gen
5.3 years ago by John ▴ 270
0
votes
0
replies
1.1k
views
Comment: C: How to Align only few transcript and get count?
5.3 years ago by John ▴ 270
0
votes
1
reply
1.1k
views
Comment: C: How to Align only few transcript and get count?
5.3 years ago by John ▴ 270
1
vote
0
replies
1.9k
views
Comment: C: Differential network analysis for two treatments
5.3 years ago by John ▴ 270
0
votes
1
reply
1.9k
views
Comment: C: Differential network analysis for two treatments
5.4 years ago by John ▴ 270
9
votes
10
replies
1.9k
views
Differential network analysis for two treatments
RNA-Seq R
5.4 years ago by John ▴ 270
0
votes
0
replies
1.9k
views
Comment: C: Differential network analysis for two treatments
5.4 years ago by John ▴ 270
2
votes
2
replies
11k
views
How to make clusters in heat map using ggplot2?
RNA-Seq rna-seq R
5.6 years ago by John ▴ 270
0
votes
1
reply
953
views
Comment: C: How much importance is RNAseq experimental bias?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
6
votes
12
replies
8.3k
views
How to find correlation between two datasets/vectors?
RNA-Seq
5.6 years ago by John ▴ 270
0
votes
1
reply
1.9k
views
Comment: C: Is there a way to compare single-cell RNA seq and Ribotag-seq?
5.6 years ago by John ▴ 270
0
votes
1
reply
8.3k
views
Comment: C: How to find correlation between two datasets/vectors?
5.6 years ago by John ▴ 270
0
votes
1
reply
1.9k
views
Comment: C: Is there a way to compare single-cell RNA seq and Ribotag-seq?
5.6 years ago by John ▴ 270
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