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Microbiome / metagenomics databases
microbiome database metagenomics
2.0 years ago by erwan.scaon ▴ 950
0
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1
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104k
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Comment: Comment: Number of mapped reads from BAM file
2.0 years ago by erwan.scaon ▴ 950
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0
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523
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Enterotypes - Get raw data from E. Le Chatelier et al., 2013
Enterotypes MGnify
updated 20 months ago by 44k • written 2.5 years ago by ▴ 950
2
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1
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1.7k
views
Answer: Answer: How to select rows in a column and add a zero to selected rows
2.9 years ago by erwan.scaon ▴ 950
2
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4
replies
5.9k
views
blast culling_limit option behavior
blastn alignment culling_limit
updated 3.2 years ago by ▴ 20 • written 8.0 years ago by ▴ 950
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1.0k
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Comment: C: Extract all seqs bewteen two seqs ID in Fastq
4.4 years ago by erwan.scaon ▴ 950
0
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1
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1.0k
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Comment: C: Extract all seqs bewteen two seqs ID in Fastq
4.4 years ago by erwan.scaon ▴ 950
0
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4
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1.0k
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Extract all seqs bewteen two seqs ID in Fastq
fastq awk sed
updated 4.4 years ago by 164k • written 4.4 years ago by ▴ 950
2
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1
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2.1k
views
Answer: A: Algorithm based differences between Mutect2 and Haplotypecaller?
5.3 years ago by erwan.scaon ▴ 950
1
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0
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12k
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Answer: A: Genome assembly statistical tools
5.3 years ago by erwan.scaon ▴ 950
0
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4
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2.8k
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Diffbind error : sequences from an unspecified genome; no seqlengths
Diffbind MACS2 GRanges MACS ChIP-Seq
updated 5.3 years ago by • 0 • written 6.7 years ago by ▴ 950
1
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0
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4.1k
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Answer: A: choose between normalization techniques for OTU counts
5.7 years ago by erwan.scaon ▴ 950
0
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1
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2.3k
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Answer: A: DESEQ2 size factors change when number of samples change in the design
6.0 years ago by erwan.scaon ▴ 950
0
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0
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978
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Find the closest Salmonella complete genome (starting with a NGS sample from a single Salmonella strain)
salmonella strainseeker snippy
6.1 years ago by erwan.scaon ▴ 950
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0
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3.2k
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Comment: C: strandness of paired-end data
6.1 years ago by erwan.scaon ▴ 950
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0
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3.3k
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Comment: C: edirect esearch : exclude given accessions
6.1 years ago by erwan.scaon ▴ 950
0
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0
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3.3k
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Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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1
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3.3k
views
Answer: A: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
3
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20
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3.3k
views
edirect esearch : exclude given accessions
edirect esearch ncbi
6.2 years ago by erwan.scaon ▴ 950
0
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1
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3.3k
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Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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1
reply
3.3k
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Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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1
reply
3.3k
views
Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
votes
1
reply
3.3k
views
Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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1
reply
3.3k
views
Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
votes
1
reply
3.3k
views
Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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0
replies
3.3k
views
Comment: C: edirect esearch : exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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0
replies
3.3k
views
Comment: C: Edirect esearch exclude given accessions
6.2 years ago by erwan.scaon ▴ 950
0
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1
reply
104k
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Comment: C: Number of mapped reads from BAM file
6.2 years ago by erwan.scaon ▴ 950
0
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0
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10k
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Answer: A: Fasta file filtering
6.5 years ago by erwan.scaon ▴ 950
1
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0
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3.3k
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Comment: C: Parsing Blast output on linux/unix
6.5 years ago by erwan.scaon ▴ 950
0
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1
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8.4k
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Comment: C: Kallisto TPM values
6.5 years ago by erwan.scaon ▴ 950
0
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1
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2.0k
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Comment: C: Search only plasmids from NT database using local BLAST
6.5 years ago by erwan.scaon ▴ 950
1
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1
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2.0k
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Comment: C: Search only plasmids from NT database using local BLAST
6.5 years ago by erwan.scaon ▴ 950
2
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0
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3.0k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
6.5 years ago by erwan.scaon ▴ 950
0
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1
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8.4k
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Comment: C: Kallisto TPM values
6.5 years ago by erwan.scaon ▴ 950
1
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1
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1.4k
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Comment: C: Please suggest your idea for variant calling analysis of many BAM files from who
6.6 years ago by erwan.scaon ▴ 950
0
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0
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6.2k
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Comment: A: STAR options for RNA Seq
6.6 years ago by erwan.scaon ▴ 950
0
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1
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3.0k
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Comment: C: How to make a custom gtf or gff3 file with a list containing transcript loci
6.6 years ago by erwan.scaon ▴ 950
0
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0
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2.5k
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Comment: C: extracting sequence from fast file
6.6 years ago by erwan.scaon ▴ 950
0
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0
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1.7k
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Comment: C: How to convert a LONG list of Genbank accession numbers for mRNA variants to a l
6.6 years ago by erwan.scaon ▴ 950
2
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0
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24k
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Comment: C: Is there a tool that sorts gtf files?
6.7 years ago by erwan.scaon ▴ 950
2
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1
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24k
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Comment: C: Is there a tool that sorts gtf files?
6.7 years ago by erwan.scaon ▴ 950
6
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3
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24k
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Answer: A: Is there a tool that sorts gtf files?
6.7 years ago by erwan.scaon ▴ 950
1
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1
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4.5k
views
Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
0
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0
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4.5k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
0
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1
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4.5k
views
Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
0
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1
reply
4.5k
views
Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
11
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28
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4.5k
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ChIP-Seq samples : FASTQ quality control
ChIP-Seq QC
6.7 years ago by erwan.scaon ▴ 950
0
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1
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4.5k
views
Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
0
votes
1
reply
4.5k
views
Comment: C: ChIP-Seq samples : FASTQ quality control
6.7 years ago by erwan.scaon ▴ 950
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