Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
0
replies
3.2k
views
Answer: Answer: Filtering long indels from VCF
15 months ago by bari.ballew ▴ 470
0
votes
0
replies
812
views
Job: Two Bioinformatics positions (GWAS and NGS pipelines) @Cancer Genomics Research Lab, National Cancer Institute - MD, USA
phd gwas reproducibility next-gen
updated 17 months ago by 44k • written 4.1 years ago by ▴ 470
0
votes
1
reply
1.1k
views
Job: GWAS Bioinformatician at the Cancer Genomics Research Lab, National Cancer Institute - MD, USA
gwas assocation
updated 17 months ago by 44k • written 4.1 years ago by ▴ 470
0
votes
0
replies
1.0k
views
Answer: A: Genotyping samples at a predetermined list of locations
4.3 years ago by bari.ballew ▴ 470
0
votes
0
replies
4.9k
views
Comment: C: GATK GenomicsDBImport - use list as input
4.3 years ago by bari.ballew ▴ 470
1
vote
0
replies
4.9k
views
Answer: A: GATK GenomicsDBImport - use list as input
4.3 years ago by bari.ballew ▴ 470
0
votes
0
replies
800
views
Comment: C: illumina variant interpreter vcf format version error
4.6 years ago by bari.ballew ▴ 470
1
vote
1
reply
3.3k
views
Answer: A: Rename Chromosome position/Notation in VCF file
4.6 years ago by bari.ballew ▴ 470
2
votes
0
replies
1.1k
views
Answer: A: Identifying zygosity of somatic deletion
4.8 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.7k
views
Answer: A: Are there any issues with using sample reads coming from different technologies
4.8 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.4k
views
Answer: A: Selecting set of SNPs using vcftools
5.2 years ago by bari.ballew ▴ 470
1
vote
0
replies
4.0k
views
Answer: A: Snakemake FastQC MissingOutputFiles ErrorM
5.2 years ago by bari.ballew ▴ 470
0
votes
1
reply
1.1k
views
Answer: A: Query regarding somatic variant calling
5.3 years ago by bari.ballew ▴ 470
0
votes
0
replies
2.3k
views
Answer: A: Removing white space from the beginning of the second field (sequence) in a fast
5.3 years ago by bari.ballew ▴ 470
2
votes
0
replies
866
views
Answer: A: Not call some variants in some populations?
5.3 years ago by bari.ballew ▴ 470
0
votes
0
replies
970
views
Answer: A: Merging SNV and DIV vcfs of the same Individual
5.3 years ago by bari.ballew ▴ 470
3
votes
1
reply
1.7k
views
Answer: A: skipping column names using awk
5.3 years ago by bari.ballew ▴ 470
4
votes
1
reply
29k
views
Answer: A: Best way to query VCF for specific variants
5.3 years ago by bari.ballew ▴ 470
19
votes
1
reply
23k
views
Answer: A: VCF merge or concatenate?
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.4k
views
Comment: A: MutSig2CV with self-generated "maf file:
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
2.0k
views
Answer: A: Filter out low coverage and minor alleles of a frequency above 40%.
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.4k
views
Answer: A: Read .sample file (file format available in plink) as a dataframe in pandas
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.2k
views
Answer: A: Matching mutation in bed files to their corresponding bam files
5.4 years ago by bari.ballew ▴ 470
0
votes
1
reply
2.0k
views
Comment: A: Filter out low coverage and minor alleles of a frequency above 40%.
5.4 years ago by bari.ballew ▴ 470
1
vote
0
replies
2.1k
views
Answer: A: DeepVariant and Gene Panels
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
2.3k
views
Answer: A: targets in a bed at or above a coverage
5.4 years ago by bari.ballew ▴ 470
0
votes
0
replies
1.3k
views
Comment: C: varscan tool for copy number variation detection
5.4 years ago by bari.ballew ▴ 470
2
votes
0
replies
3.9k
views
Answer: A: snakemake wildcard for fastq files
5.5 years ago by bari.ballew ▴ 470
3
votes
0
replies
3.5k
views
Answer: A: Rename FASTA headers based on filename
5.5 years ago by bari.ballew ▴ 470
0
votes
0
replies
4.4k
views
Comment: C: Looking For Approaches For Finding Contamination And Sample Identity Matching Is
5.5 years ago by bari.ballew ▴ 470
0
votes
0
replies
2.4k
views
Comment: C: MAF file having mutation data
5.6 years ago by bari.ballew ▴ 470
0
votes
1
reply
2.4k
views
Comment: C: MAF file having mutation data
5.6 years ago by bari.ballew ▴ 470
0
votes
1
reply
2.4k
views
Answer: A: MAF file having mutation data
5.6 years ago by bari.ballew ▴ 470
1
vote
0
replies
4.4k
views
Answer: A: Downstream analysis of VCF files obtained from VarScan2
5.6 years ago by bari.ballew ▴ 470
4
votes
0
replies
2.4k
views
Answer: A: tool to detect large deletions
5.6 years ago by bari.ballew ▴ 470
1
vote
1
reply
1.8k
views
Answer: A: From pooled fastq data to SNPs
6.8 years ago by bari.ballew ▴ 470
36 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6