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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
15 days ago by samuel.a.odonnell ▴ 580
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442
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Comment: Comment: Assembly Question
11 weeks ago by samuel.a.odonnell ▴ 580
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392
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Comment: Comment: Oxford Nanopore Sequencing Output Related
3 months ago by samuel.a.odonnell ▴ 580
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699
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Comment: Comment: Eukaryotic genome Assembly
4 months ago by samuel.a.odonnell ▴ 580
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1
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348
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Comment: Comment: genome assembly for a pathogens
4 months ago by samuel.a.odonnell ▴ 580
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1
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853
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Comment: Comment: SPADES Result Comparison
5 months ago by samuel.a.odonnell ▴ 580
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391
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Comment: Comment: Mismatch between number of reads in fastq and mapped reads
5 months ago by samuel.a.odonnell ▴ 580
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0
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1.1k
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Comment: Comment: Best practices in Fungal Genome Assembly
5 months ago by samuel.a.odonnell ▴ 580
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1
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1.1k
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Comment: Comment: Best practices in Fungal Genome Assembly
5 months ago by samuel.a.odonnell ▴ 580
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1
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1.1k
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Comment: Comment: Best practices in Fungal Genome Assembly
5 months ago by samuel.a.odonnell ▴ 580
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0
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1.1k
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Comment: Comment: Best practices in Fungal Genome Assembly
5 months ago by samuel.a.odonnell ▴ 580
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2
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1.5k
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Comment: Comment: Removing duplicates
7 months ago by samuel.a.odonnell ▴ 580
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1
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1.5k
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Comment: Comment: Removing duplicates
7 months ago by samuel.a.odonnell ▴ 580
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845
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
13 months ago by samuel.a.odonnell ▴ 580
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2.6k
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Comment: Comment: Short Read Data Genome Assembly
14 months ago by samuel.a.odonnell ▴ 580
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1
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1.6k
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Comment: Comment: The GATK "The given bam input has no sample names." error
15 months ago by samuel.a.odonnell ▴ 580
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0
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1.1k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
15 months ago by samuel.a.odonnell ▴ 580
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1
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1.1k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
15 months ago by samuel.a.odonnell ▴ 580
0
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1
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654
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Comment: Comment: Expect heterozygous variant from reads
16 months ago by samuel.a.odonnell ▴ 580
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0
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1.1k
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
18 months ago by samuel.a.odonnell ▴ 580
1
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1
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2.3k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
19 months ago by samuel.a.odonnell ▴ 580
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0
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1.3k
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Comment: Comment: MissAssembly Correction
21 months ago by samuel.a.odonnell ▴ 580
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1
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1.3k
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Comment: Comment: MissAssembly Correction
21 months ago by samuel.a.odonnell ▴ 580
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0
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657
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
22 months ago by samuel.a.odonnell ▴ 580
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1
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1.4k
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Comment: Comment: Problem with NextDenovo fungal assembly
22 months ago by samuel.a.odonnell ▴ 580
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0
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536
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Comment: Comment: Tools for annotating predicted genes?
22 months ago by samuel.a.odonnell ▴ 580
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0
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1.7k
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Comment: Comment: minimap2, before or after assembly?
23 months ago by samuel.a.odonnell ▴ 580
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0
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995
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Comment: Comment: Filtering mitochondrion reads from FastQ files
24 months ago by samuel.a.odonnell ▴ 580
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0
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1.5k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
2.0 years ago by samuel.a.odonnell ▴ 580
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0
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1.7k
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Comment: Comment: Low basecalling of raw ONT data
2.1 years ago by samuel.a.odonnell ▴ 580
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0
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1.2k
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
2.1 years ago by samuel.a.odonnell ▴ 580
2
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1
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776
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
2.1 years ago by samuel.a.odonnell ▴ 580
2
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0
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1.0k
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Comment: Comment: Help with geom_dotplot() script
2.2 years ago by samuel.a.odonnell ▴ 580
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0
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919
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Comment: Comment: How can I make a reference genome from multiple genomes?
2.2 years ago by samuel.a.odonnell ▴ 580
4
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1
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693
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 2.2 years ago by ★ 1.4k • written 2.2 years ago by ▴ 580
2
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1
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1.0k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
2.2 years ago by samuel.a.odonnell ▴ 580
1
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1
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697
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Comment: Comment: Unexpected coverage across genome
2.2 years ago by samuel.a.odonnell ▴ 580
1
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0
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1.0k
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
2.2 years ago by samuel.a.odonnell ▴ 580
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0
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1.2k
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Comment: Comment: Convert fasta to Fastq/bam
2.3 years ago by samuel.a.odonnell ▴ 580
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0
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1.1k
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Comment: Comment: Variant calling for scaffold genome
2.5 years ago by samuel.a.odonnell ▴ 580
1
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1
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1.1k
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Comment: Comment: A question about SPAdes
2.5 years ago by samuel.a.odonnell ▴ 580
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1
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1.2k
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Comment: Comment: Method to fill N gaps with de novo assembly
2.5 years ago by samuel.a.odonnell ▴ 580
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0
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719
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Comment: Comment: comparing and aligning 2 de novo genomes
2.5 years ago by samuel.a.odonnell ▴ 580
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1
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719
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Comment: Comment: comparing and aligning 2 de novo genomes
2.5 years ago by samuel.a.odonnell ▴ 580
0
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0
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1.3k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.5 years ago by samuel.a.odonnell ▴ 580
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1
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1.3k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.5 years ago by samuel.a.odonnell ▴ 580
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1
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1.3k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.5 years ago by samuel.a.odonnell ▴ 580
1
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0
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1.3k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.5 years ago by samuel.a.odonnell ▴ 580
0
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0
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725
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Comment: Comment: Correct de novo assembly workflow and mapping
2.5 years ago by samuel.a.odonnell ▴ 580
0
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1
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855
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Comment: Comment: Considering two and more variation in polyploidy
2.5 years ago by samuel.a.odonnell ▴ 580
121 results • Page 1 of 3
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