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Comment: Comment: Type of Pangenome Type/program to use for fungal isolates of the same species, b
5 weeks ago by samuel.a.odonnell ▴ 590
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828
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Comment: Comment: Phylogenetic tree from whole genome using BUSCO
6 weeks ago by samuel.a.odonnell ▴ 590
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
5 months ago by samuel.a.odonnell ▴ 590
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611
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Comment: Comment: Assembly Question
7 months ago by samuel.a.odonnell ▴ 590
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611
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Comment: Comment: Oxford Nanopore Sequencing Output Related
8 months ago by samuel.a.odonnell ▴ 590
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1.0k
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Comment: Comment: Eukaryotic genome Assembly
9 months ago by samuel.a.odonnell ▴ 590
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477
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Comment: Comment: genome assembly for a pathogens
9 months ago by samuel.a.odonnell ▴ 590
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1.5k
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Comment: Comment: SPADES Result Comparison
9 months ago by samuel.a.odonnell ▴ 590
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586
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Comment: Comment: Mismatch between number of reads in fastq and mapped reads
10 months ago by samuel.a.odonnell ▴ 590
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2.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
10 months ago by samuel.a.odonnell ▴ 590
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2.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
10 months ago by samuel.a.odonnell ▴ 590
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2.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
10 months ago by samuel.a.odonnell ▴ 590
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2.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
10 months ago by samuel.a.odonnell ▴ 590
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2
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2.0k
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Comment: Comment: Removing duplicates
11 months ago by samuel.a.odonnell ▴ 590
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2.0k
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Comment: Comment: Removing duplicates
11 months ago by samuel.a.odonnell ▴ 590
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1.1k
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
17 months ago by samuel.a.odonnell ▴ 590
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4.0k
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Comment: Comment: Short Read Data Genome Assembly
19 months ago by samuel.a.odonnell ▴ 590
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1
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2.1k
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Comment: Comment: The GATK "The given bam input has no sample names." error
19 months ago by samuel.a.odonnell ▴ 590
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0
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1.4k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
19 months ago by samuel.a.odonnell ▴ 590
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1
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1.4k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
20 months ago by samuel.a.odonnell ▴ 590
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1
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779
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Comment: Comment: Expect heterozygous variant from reads
20 months ago by samuel.a.odonnell ▴ 590
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1.3k
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
22 months ago by samuel.a.odonnell ▴ 590
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1
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2.5k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
23 months ago by samuel.a.odonnell ▴ 590
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1.5k
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Comment: Comment: MissAssembly Correction
2.1 years ago by samuel.a.odonnell ▴ 590
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1
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1.5k
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Comment: Comment: MissAssembly Correction
2.1 years ago by samuel.a.odonnell ▴ 590
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757
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
2.2 years ago by samuel.a.odonnell ▴ 590
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1
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1.6k
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Comment: Comment: Problem with NextDenovo fungal assembly
2.2 years ago by samuel.a.odonnell ▴ 590
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627
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Comment: Comment: Tools for annotating predicted genes?
2.2 years ago by samuel.a.odonnell ▴ 590
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2.1k
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Comment: Comment: minimap2, before or after assembly?
2.3 years ago by samuel.a.odonnell ▴ 590
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1.2k
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Comment: Comment: Filtering mitochondrion reads from FastQ files
2.4 years ago by samuel.a.odonnell ▴ 590
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1.8k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
2.4 years ago by samuel.a.odonnell ▴ 590
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1.9k
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Comment: Comment: Low basecalling of raw ONT data
2.4 years ago by samuel.a.odonnell ▴ 590
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1.4k
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
2.4 years ago by samuel.a.odonnell ▴ 590
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881
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
2.5 years ago by samuel.a.odonnell ▴ 590
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1.3k
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Comment: Comment: Help with geom_dotplot() script
2.5 years ago by samuel.a.odonnell ▴ 590
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1.1k
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Comment: Comment: How can I make a reference genome from multiple genomes?
2.6 years ago by samuel.a.odonnell ▴ 590
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1
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777
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 2.6 years ago by ★ 1.5k • written 2.6 years ago by ▴ 590
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1.2k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
2.6 years ago by samuel.a.odonnell ▴ 590
1
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1
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800
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Comment: Comment: Unexpected coverage across genome
2.6 years ago by samuel.a.odonnell ▴ 590
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1.2k
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
2.6 years ago by samuel.a.odonnell ▴ 590
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0
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1.4k
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Comment: Comment: Convert fasta to Fastq/bam
2.6 years ago by samuel.a.odonnell ▴ 590
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0
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1.3k
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Comment: Comment: Variant calling for scaffold genome
2.9 years ago by samuel.a.odonnell ▴ 590
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1
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1.2k
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Comment: Comment: A question about SPAdes
2.9 years ago by samuel.a.odonnell ▴ 590
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1
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1.4k
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Comment: Comment: Method to fill N gaps with de novo assembly
2.9 years ago by samuel.a.odonnell ▴ 590
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832
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Comment: Comment: comparing and aligning 2 de novo genomes
2.9 years ago by samuel.a.odonnell ▴ 590
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832
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Comment: Comment: comparing and aligning 2 de novo genomes
2.9 years ago by samuel.a.odonnell ▴ 590
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1.6k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.9 years ago by samuel.a.odonnell ▴ 590
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1
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1.6k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.9 years ago by samuel.a.odonnell ▴ 590
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1
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1.6k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.9 years ago by samuel.a.odonnell ▴ 590
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0
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1.6k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.9 years ago by samuel.a.odonnell ▴ 590
123 results • Page 1 of 3
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