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Comment: Comment: Considering two and more variation in polyploidy
2.6 years ago by samuel.a.odonnell ▴ 580
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Comment: Comment: Why he/she disabled the base calling in Guppy?
2.6 years ago by samuel.a.odonnell ▴ 580
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Comment: Comment: Re-assembly assembled genomes
2.8 years ago by samuel.a.odonnell ▴ 580
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459
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Detecting novel material inside repeat array
genome repeat alignment
3.1 years ago by samuel.a.odonnell ▴ 580
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1.2k
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Comment: Comment: How are two alleles typically represented in a whole genome sequence?
3.1 years ago by samuel.a.odonnell ▴ 580
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656
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Comment: Comment: Structural variation nomenclature ambiguity
3.1 years ago by samuel.a.odonnell ▴ 580
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
3.2 years ago by samuel.a.odonnell ▴ 580
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2.4k
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
3.2 years ago by samuel.a.odonnell ▴ 580
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4.2k
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Comment: Comment: large number of contigs after assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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4.2k
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Comment: Comment: large number of contigs after assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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4.2k
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Comment: Comment: large number of contigs after assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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1
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4.2k
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Comment: Comment: large number of contigs after assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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4.2k
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Comment: Comment: large number of contigs after assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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1
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4.1k
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Comment: Comment: How to align fastq files against a reference assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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2.2k
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Comment: Comment: Is it possible to do mummerplot with reference and query sequences that have man
3.2 years ago by samuel.a.odonnell ▴ 580
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1.6k
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Comment: Comment: fasta index file too big for genome browsers
3.2 years ago by samuel.a.odonnell ▴ 580
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4.1k
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Comment: Comment: How to align fastq files against a reference assembly
3.2 years ago by samuel.a.odonnell ▴ 580
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1
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3.8k
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Answer: Answer: Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
3.2 years ago by samuel.a.odonnell ▴ 580
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1.4k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
3.3 years ago by samuel.a.odonnell ▴ 580
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1.1k
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
3.3 years ago by samuel.a.odonnell ▴ 580
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1
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1.4k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
3.3 years ago by samuel.a.odonnell ▴ 580
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1.1k
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
3.3 years ago by samuel.a.odonnell ▴ 580
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1.8k
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Comment: Comment: De novo genome assembly
3.3 years ago by samuel.a.odonnell ▴ 580
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764
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Comment: Comment: vcf file genotypes
3.3 years ago by samuel.a.odonnell ▴ 580
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1.4k
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Comment: Comment: Genome analysis and improvement
3.3 years ago by samuel.a.odonnell ▴ 580
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1
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1.4k
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Comment: Comment: Genome analysis and improvement
3.3 years ago by samuel.a.odonnell ▴ 580
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1
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1.4k
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Comment: Comment: Genome analysis and improvement
3.3 years ago by samuel.a.odonnell ▴ 580
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0
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884
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Comment: Comment: How to get uniform data yields per barcode in nanopore sequencing
3.3 years ago by samuel.a.odonnell ▴ 580
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1.5k
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Comment: Comment: Generating a dotplot following ragtag scaffolding
3.4 years ago by samuel.a.odonnell ▴ 580
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2.0k
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Comment: Comment: Flye assembly, increased coverage results in decreased N50
3.4 years ago by samuel.a.odonnell ▴ 580
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1
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1.6k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
3.4 years ago by samuel.a.odonnell ▴ 580
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1.5k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
3.4 years ago by samuel.a.odonnell ▴ 580
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1
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1.6k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
3.4 years ago by samuel.a.odonnell ▴ 580
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1.6k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
3.4 years ago by samuel.a.odonnell ▴ 580
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2
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1.5k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
3.4 years ago by samuel.a.odonnell ▴ 580
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1
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1.5k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
3.4 years ago by samuel.a.odonnell ▴ 580
1
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1
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1.6k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
3.4 years ago by samuel.a.odonnell ▴ 580
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1.3k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
3.4 years ago by samuel.a.odonnell ▴ 580
2
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1
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1.3k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
3.4 years ago by samuel.a.odonnell ▴ 580
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1.1k
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Comment: Comment: Scaffolding of bacterial genome assemblies
3.4 years ago by samuel.a.odonnell ▴ 580
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2.0k
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Comment: Comment: LOW BUSCO Score for De novo genome assembly
3.4 years ago by samuel.a.odonnell ▴ 580
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1.3k
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Comment: Comment: Problem creating a reference genome
3.5 years ago by samuel.a.odonnell ▴ 580
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1.6k
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Comment: Comment: RagTag assembly after spades
3.6 years ago by samuel.a.odonnell ▴ 580
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1.7k
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Comment: Comment: Variant calling from comparison of assembled genomes where there is only one r
3.6 years ago by samuel.a.odonnell ▴ 580
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2.5k
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Comment: Comment: Dealing with chimeric assembly contigs
3.6 years ago by samuel.a.odonnell ▴ 580
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2.5k
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Comment: Comment: Dealing with chimeric assembly contigs
3.6 years ago by samuel.a.odonnell ▴ 580
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2.4k
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Answer: Answer: visualize phased vcf file
3.6 years ago by samuel.a.odonnell ▴ 580
3
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12k
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Answer: Answer: samtools multithreads
3.7 years ago by samuel.a.odonnell ▴ 580
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1
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1.4k
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Comment: C: structural variant discovery from highly mutated viral population using nanopore
3.7 years ago by samuel.a.odonnell ▴ 580
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2.6k
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Comment: C: Basecalling of Nanopore Raw file
3.7 years ago by samuel.a.odonnell ▴ 580
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