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Comment: Comment: Can we use exon- counts to calculate coverage?
21 months ago by unawaz ▴ 60
1
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3
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1.1k
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Can we use exon- counts to calculate coverage?
rna-seq
21 months ago by unawaz ▴ 60
3
votes
1
reply
812
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How to get transcript coverage from Salmon output?
salmon RNAseq RSeQC transcriptome
updated 2.2 years ago by 102k • written 2.2 years ago by ▴ 60
0
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1
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38k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
updated 5.8 years ago by 45k • written 6.4 years ago by ▴ 60
1
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1
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38k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
updated 5.8 years ago by 45k • written 6.3 years ago by ▴ 60
1
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1
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57k
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Comment: C: ClusterProfiler : What is GeneRatio and BgRatio?
6.0 years ago by unawaz ▴ 60
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1
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51k
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Comment: C: Concatenating fastq.gz files across lanes
6.2 years ago by unawaz ▴ 60
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1
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38k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
6.4 years ago by unawaz ▴ 60
0
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1
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38k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
6.4 years ago by unawaz ▴ 60
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0
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6.9k
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Comment: C: Differential expression: replicates in one condition, no replicates in the other
6.4 years ago by unawaz ▴ 60
0
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1
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2.3k
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Is it appropriate to apply RUVseq on output from kallisto?
RNA-Seq batch-correction kallisto
updated 14 months ago by 45k • written 6.4 years ago by ▴ 60
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1
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3.0k
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Comment: C: to get each covariate with PC loading in PCA
6.4 years ago by unawaz ▴ 60
11
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7
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5.9k
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6 follow
What's your preferred pathway enrichment analysis tool after DEG analysis and why?
gene ontology RNA-Seq
updated 6.4 years ago by 27k • written 6.4 years ago by ▴ 60
0
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0
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6.9k
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Answer: A: Differential expression: replicates in one condition, no replicates in the other
6.4 years ago by unawaz ▴ 60
0
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1
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1.6k
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Answer: A: RNA-Seq data analysis mapping to closest genome as reference genome
6.5 years ago by unawaz ▴ 60
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0
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1.9k
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Comment: C: Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
6.5 years ago by unawaz ▴ 60
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0
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7.1k
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Comment: C: Is there a way to get the name or IDs of genes with the goseq table?
6.5 years ago by unawaz ▴ 60
8
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8
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7.1k
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6 follow
Is there a way to get the name or IDs of genes with the goseq table?
RNA-Seq gene ontology goseq
updated 2.3 years ago by • 0 • written 6.5 years ago by ▴ 60
1
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2
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3.3k
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How to make a gene expression correlation graph?
RNA-Seq R edgeR
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 60
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0
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2.5k
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Answer: A: Advice on running a differential expression analysis on patients with slightly d
6.7 years ago by unawaz ▴ 60
3
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4
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2.5k
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Advice on running a differential expression analysis on patients with slightly different mutations within each group
RNA-Seq differential expression edgeR deseq2
6.7 years ago by unawaz ▴ 60
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0
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2.5k
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Comment: C: Advice on running a differential expression analysis on patients with slightly d
6.7 years ago by unawaz ▴ 60
10
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4
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2.7k
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Low mapping percentage after mapping RNA-seq reads to a closely related species
RNA-Seq alignment genome
updated 7.0 years ago by 9.0k • written 7.2 years ago by ▴ 60
0
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0
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1.5k
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How to retain transcripts from blastx output at a given coverage?
assembly RNA-Seq BLASTX Trinity
7.3 years ago by unawaz ▴ 60
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