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3
votes
4
replies
3.8k
views
How to do Tajima's D analysis?
snp genome
updated 10 months ago by ★ 29k • written 7.2 years ago by ▴ 70
13
votes
4
replies
11k
views
6 follow
Change rsID to chromosome:location in bim files for plink
genome snp plink
updated 20 months ago by ▴ 620 • written 6.1 years ago by ▴ 70
0
votes
0
replies
3.1k
views
Comment: C: Segmentation fault error while running extractPIRs from ShapeIT
5.8 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
3.1k
views
Comment: C: Segmentation fault error while running extractPIRs from ShapeIT
5.8 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
1.0k
views
SNPduo error reading ped files
IBS genome SNPduo ped
updated 2.2 years ago by 45k • written 5.9 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: Replace missing SNPs of one individual with reference alleles in a VCF file
6.0 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: Replace missing SNPs of one individual with reference alleles in a VCF file
6.1 years ago by amitgourav.ghosh12 ▴ 70
2
votes
3
replies
1.8k
views
Replace missing SNPs of one individual with reference alleles in a VCF file
SNP bcftools VCFtools sequencing
updated 6.1 years ago by 12k • written 6.1 years ago by ▴ 70
0
votes
0
replies
5.8k
views
Comment: C: VCFtools: --window-pi and --from-bp --to-bp produces different start and ending
7.1 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
5.4k
views
Comment: C: Tajima's D Using SNP data ONLY
7.2 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
3.8k
views
Comment: C: How to do Tajima's D analysis?
7.2 years ago by amitgourav.ghosh12 ▴ 70
1
vote
0
replies
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
1
vote
1
reply
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
10k
views
Comment: C: How to do pca plot from .eigenval and .eigenvec files from Plink in R.
7.3 years ago by amitgourav.ghosh12 ▴ 70
13
votes
13
replies
10k
views
How to do pca plot from .eigenval and .eigenvec files from Plink in R.
R SNP
updated 7.3 years ago by 105k • written 7.3 years ago by ▴ 70
0
votes
0
replies
4.9k
views
Comment: C: Use plink to extract data using common SNPs and merge this into one file
7.3 years ago by amitgourav.ghosh12 ▴ 70
1
vote
1
reply
4.9k
views
Comment: C: Use plink to extract data using common SNPs and merge this into one file
7.3 years ago by amitgourav.ghosh12 ▴ 70
1
vote
0
replies
2.3k
views
Answer: A: Plink error message while merging
7.3 years ago by amitgourav.ghosh12 ▴ 70
1
vote
1
reply
2.3k
views
Plink error message while merging
SNP next-gen
7.3 years ago by amitgourav.ghosh12 ▴ 70
7
votes
14
replies
4.9k
views
Use plink to extract data using common SNPs and merge this into one file
SNP sequencing
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
4.9k
views
Comment: C: How to separate out overlapping data in 2 datasets and then merge the file in pl
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
4.9k
views
Comment: C: How to separate out overlapping data in 2 datasets and then merge the file in pl
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
0
replies
4.9k
views
Comment: C: Removing SNPs with over 2% missing rate in plink
7.3 years ago by amitgourav.ghosh12 ▴ 70
4
votes
2
replies
4.9k
views
Removing SNPs with over 2% missing rate in plink
SNP
updated 7.3 years ago by ▴ 240 • written 7.3 years ago by ▴ 70
0
votes
0
replies
3.5k
views
Comment: C: How to generate text file having SNP list from bim file in plink?
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
4.9k
views
Comment: C: How to separate out overlapping data in 2 datasets and then merge the file in pl
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
3.5k
views
Comment: C: How to generate text file having SNP list from bim file in plink?
7.3 years ago by amitgourav.ghosh12 ▴ 70
1
vote
3
replies
3.5k
views
How to generate text file having SNP list from bim file in plink?
SNP
updated 7.3 years ago by ★ 2.7k • written 7.3 years ago by ▴ 70
0
votes
1
reply
4.9k
views
Comment: C: I am using Plink 1.9 to merge two data sets, I have found out the common SNPs am
7.3 years ago by amitgourav.ghosh12 ▴ 70
0
votes
1
reply
4.9k
views
Comment: C: I am using Plink 1.9 to merge two data sets, I have found out the common SNPs am
7.3 years ago by amitgourav.ghosh12 ▴ 70
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