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Mapping metatranscriptomics rRNA reads to MAG 16S rRNA genes
RNA-Seq 16S rRNA mapping metatranscriptomics
updated 3.9 years ago by 20 • written 4.7 years ago by ▴ 30
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741
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Is there a way to place short reads within MEGA software?
short reads phylogenetics MEGA pplacer
4.6 years ago by dark.lord ▴ 30
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2.3k
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Comment: C: How do I decide the mapping quality score in featureCounts?
4.7 years ago by dark.lord ▴ 30
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2
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2.3k
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How do I decide the mapping quality score in featureCounts?
featureCounts quality score rna-seq
4.7 years ago by dark.lord ▴ 30
0
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0
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1.8k
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Comment: C: Recent metatranscriptomics workflow
6.4 years ago by dark.lord ▴ 30
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2
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1.8k
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Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto
6.4 years ago by dark.lord ▴ 30
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0
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9.3k
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Comment: A: Getting average fragment length for single end reads
6.5 years ago by dark.lord ▴ 30
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4.0k
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Comment: C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.6 years ago by dark.lord ▴ 30
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1
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4.0k
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Comment: C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.6 years ago by dark.lord ▴ 30
3
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7
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4.0k
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Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
16S rRNA Assembly SPAdes reago
6.6 years ago by dark.lord ▴ 30
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4.0k
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Comment: C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.6 years ago by dark.lord ▴ 30
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0
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88k
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Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
6.6 years ago by dark.lord ▴ 30
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4.6k
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Answer: A: The --contig option for SPAdes
6.6 years ago by dark.lord ▴ 30
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0
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1.6k
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Comment: C: Metawatt [ERROR] String out of range in Six frame Pfam module
6.7 years ago by dark.lord ▴ 30
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1.6k
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Comment: C: Metawatt [ERROR] String out of range in Six frame Pfam module
6.7 years ago by dark.lord ▴ 30
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4
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1.6k
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Metawatt [ERROR] String out of range in Six frame Pfam module
assembly binning metawatt
updated 6.7 years ago by 164k • written 6.7 years ago by ▴ 30
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1
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1.3k
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Plasmidome recovery from metagenomes: why and how?
plasmids plasmid metagenome metagenomics
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 30
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2.4k
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Answer: A: Can I use both paired and single end reads in the same MEGAHIT run?
6.7 years ago by dark.lord ▴ 30
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1
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2.4k
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Can I use both paired and single end reads in the same MEGAHIT run?
megahit Assembly assembly
6.7 years ago by dark.lord ▴ 30
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1
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5.4k
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Comment: C: Trimmomatic output: how to include unpaired reads in the assembly?
6.7 years ago by dark.lord ▴ 30
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3
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5.4k
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Trimmomatic output: how to include unpaired reads in the assembly?
megahit trimmomatic assembling trimming
6.7 years ago by dark.lord ▴ 30
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