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Comment: Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
13 months ago by asalimih ▴ 60
0
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1
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473
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Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation vcf vep zygosity deepvariant
13 months ago by asalimih ▴ 60
0
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0
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503
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Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep vcf gnomad
13 months ago by asalimih ▴ 60
0
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0
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38k
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Comment: Comment: Downsampling dataset with more than 60 million reads
18 months ago by asalimih ▴ 60
0
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0
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13k
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Comment: Comment: Bedtools: merge all features with the same id
2.5 years ago by asalimih ▴ 60
3
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1
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1.0k
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Using GATK MarkDuplicates for targeted sequencing data
genomic gatk variant
updated 2.5 years ago by 88k • written 2.5 years ago by ▴ 60
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0
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1.6k
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Comment: Comment: Mutect2 read orientation bias filter effect on Somatic variant calling
2.5 years ago by asalimih ▴ 60
3
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2
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1.6k
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Mutect2 read orientation bias filter effect on Somatic variant calling
somatic bias orientation mutect2
2.5 years ago by asalimih ▴ 60
1
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1
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2.8k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
2.5 years ago by asalimih ▴ 60
0
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0
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1.9k
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Comment: Comment: Quality scores of base recalibrated Cram file
2.5 years ago by asalimih ▴ 60
0
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0
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6.1k
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Comment: Comment: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
2.6 years ago by asalimih ▴ 60
0
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0
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1.9k
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Comment: Comment: weird quality scores Cram to Fastq
2.7 years ago by asalimih ▴ 60
1
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9
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1.9k
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Quality scores of base recalibrated Cram file
fastq cram
2.5 years ago by asalimih ▴ 60
0
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0
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1.9k
views
Comment: Comment: weird quality scores Cram to Fastq
2.7 years ago by asalimih ▴ 60
0
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0
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1.9k
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Comment: Comment: weird quality scores Cram to Fastq
2.7 years ago by asalimih ▴ 60
0
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1
reply
1.9k
views
Comment: Comment: weird quality scores Cram to Fastq
2.7 years ago by asalimih ▴ 60
0
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1
reply
1.4k
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Comment: Comment: Very high variant similarity between a couple
3.4 years ago by asalimih ▴ 60
0
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1
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1.4k
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Comment: Comment: Very high variant similarity between a couple
3.4 years ago by asalimih ▴ 60
2
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4
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1.4k
views
Very high variant similarity between a couple
variant WES Consanguinity fastq
updated 3.4 years ago by ★ 3.0k • written 3.4 years ago by ▴ 60
0
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0
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2.6k
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Comment: Comment: Primer design for variants in duplicated genes?
3.5 years ago by asalimih ▴ 60
1
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1
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3.0k
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Answer: Answer: Coord_flip in R
3.5 years ago by asalimih ▴ 60
0
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0
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8.7k
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Comment: Comment: MSA of very long sequences?
3.6 years ago by asalimih ▴ 60
0
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0
replies
2.1k
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Comment: Comment: How to execute one command on all files within a directory
3.6 years ago by asalimih ▴ 60
0
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0
replies
684
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single gene GSEA
ssgsea gsea
3.6 years ago by asalimih ▴ 60
0
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1
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2.1k
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Comment: Comment: Cell type deconvolution from Bulk RNA-seq data
3.7 years ago by asalimih ▴ 60
0
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1
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2.4k
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Comment: Comment: bedtools getfasta concatenating sequences
3.7 years ago by asalimih ▴ 60
0
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3
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2.4k
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bedtools getfasta concatenating sequences
bedtools getfasta
updated 3.7 years ago by 9.2k • written 3.7 years ago by ▴ 60
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2
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2.1k
views
Answer: Answer: How to execute one command on all files within a directory
3.7 years ago by asalimih ▴ 60
0
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0
replies
5.0k
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Comment: Comment: Getting exon sequences for all human genes
3.7 years ago by asalimih ▴ 60
0
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0
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8.2k
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Comment: Comment: Exon coordinates and sequence
3.8 years ago by asalimih ▴ 60
1
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1
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910
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Refseq annotation for processed/unprocessed Pseudogenes
refseq pseudogene annotation genomics
updated 3.8 years ago by 152k • written 3.8 years ago by ▴ 60
0
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0
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1.8k
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Comment: Comment: pseudogenes and their parent gene common regions
3.8 years ago by asalimih ▴ 60
0
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0
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1.8k
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Comment: Comment: pseudogenes and their parent gene common regions
3.8 years ago by asalimih ▴ 60
4
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5
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1.8k
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pseudogenes and their parent gene common regions
calling pseudogene genomics variant
updated 6 months ago by • 0 • written 3.8 years ago by ▴ 60
0
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1
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1.3k
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Comment: Comment: tool or database to convert Gene ID to genomic position
3.8 years ago by asalimih ▴ 60
3
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3
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1.3k
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tool or database to convert Gene ID to genomic position
hg38 gene conversion id
updated 3.8 years ago by 152k • written 3.8 years ago by ▴ 60
0
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1
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1.7k
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Comment: C: limma voom normalization of train and test set
4.8 years ago by asalimih ▴ 60
0
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3
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1.7k
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limma voom normalization of train and test set
limma machine learning RNA-Seq data leakage
4.8 years ago by asalimih ▴ 60
0
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1
reply
12k
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Comment: C: GSEA preranking metric for RNA Seq
5.3 years ago by asalimih ▴ 60
1
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0
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23k
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Answer: A: Microarray: How To Select One Of Multiple Probes Corresponding To A Gene
5.8 years ago by asalimih ▴ 60
0
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1
reply
2.5k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
5.8 years ago by asalimih ▴ 60
0
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1
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2.5k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
5.8 years ago by asalimih ▴ 60
0
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1
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2.5k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
5.8 years ago by asalimih ▴ 60
4
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10
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2.5k
views
frma normalization function not working on ExpressionFeatureSet object
microarray normalization frma preprocess rma
updated 5.8 years ago by 89k • written 5.8 years ago by ▴ 60
1
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0
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2.5k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
5.8 years ago by asalimih ▴ 60
0
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1
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2.4k
views
Comment: C: Integration of Microarray datasets with different platforms and biological group
5.8 years ago by asalimih ▴ 60
0
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1
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2.4k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
5.8 years ago by asalimih ▴ 60
0
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1
reply
2.4k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
5.8 years ago by asalimih ▴ 60
0
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1
reply
2.4k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
5.8 years ago by asalimih ▴ 60
6
votes
10
replies
2.4k
views
Integration of Microarray datasets with different platforms and biological groups
limma microarray DEA batch-effect
updated 14 months ago by 45k • written 5.8 years ago by ▴ 60
58 results • Page 1 of 2
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