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0
votes
0
replies
283
views
Comment:
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
6 months ago by
asalimih
▴ 60
0
votes
1
reply
283
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
6 months ago by
asalimih
▴ 60
0
votes
0
replies
295
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
6 months ago by
asalimih
▴ 60
0
votes
0
replies
35k
views
Comment:
Comment: Downsampling dataset with more than 60 million reads
11 months ago by
asalimih
▴ 60
0
votes
0
replies
12k
views
Comment:
Comment: Bedtools: merge all features with the same id
23 months ago by
asalimih
▴ 60
3
votes
1
reply
780
views
Using GATK MarkDuplicates for targeted sequencing data
genomic
gatk
variant
updated 23 months ago by
ATpoint
85k • written 23 months ago by
asalimih
▴ 60
0
votes
0
replies
1.3k
views
Comment:
Comment: Mutect2 read orientation bias filter effect on Somatic variant calling
23 months ago by
asalimih
▴ 60
3
votes
2
replies
1.3k
views
Mutect2 read orientation bias filter effect on Somatic variant calling
somatic
bias
orientation
mutect2
23 months ago by
asalimih
▴ 60
1
vote
1
reply
2.2k
views
Comment:
Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
23 months ago by
asalimih
▴ 60
0
votes
0
replies
1.4k
views
Comment:
Comment: Quality scores of base recalibrated Cram file
23 months ago by
asalimih
▴ 60
0
votes
0
replies
5.4k
views
Comment:
Comment: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
2.1 years ago by
asalimih
▴ 60
0
votes
0
replies
1.4k
views
Comment:
Comment: weird quality scores Cram to Fastq
2.1 years ago by
asalimih
▴ 60
1
vote
9
replies
1.4k
views
Quality scores of base recalibrated Cram file
fastq
cram
23 months ago by
asalimih
▴ 60
0
votes
0
replies
1.4k
views
Comment:
Comment: weird quality scores Cram to Fastq
2.1 years ago by
asalimih
▴ 60
0
votes
0
replies
1.4k
views
Comment:
Comment: weird quality scores Cram to Fastq
2.1 years ago by
asalimih
▴ 60
0
votes
1
reply
1.4k
views
Comment:
Comment: weird quality scores Cram to Fastq
2.1 years ago by
asalimih
▴ 60
0
votes
1
reply
1.2k
views
Comment:
Comment: Very high variant similarity between a couple
2.8 years ago by
asalimih
▴ 60
0
votes
1
reply
1.2k
views
Comment:
Comment: Very high variant similarity between a couple
2.8 years ago by
asalimih
▴ 60
2
votes
4
replies
1.2k
views
Very high variant similarity between a couple
variant
WES
Consanguinity
fastq
updated 2.8 years ago by
German.M.Demidov
★ 2.9k • written 2.8 years ago by
asalimih
▴ 60
0
votes
0
replies
2.3k
views
Comment:
Comment: Primer design for variants in duplicated genes?
3.0 years ago by
asalimih
▴ 60
1
vote
1
reply
2.5k
views
Answer:
Answer: Coord_flip in R
3.0 years ago by
asalimih
▴ 60
0
votes
0
replies
7.4k
views
Comment:
Comment: MSA of very long sequences?
3.0 years ago by
asalimih
▴ 60
0
votes
0
replies
1.7k
views
Comment:
Comment: How to execute one command on all files within a directory
3.1 years ago by
asalimih
▴ 60
0
votes
0
replies
593
views
single gene GSEA
ssgsea
gsea
3.1 years ago by
asalimih
▴ 60
0
votes
1
reply
1.7k
views
Comment:
Comment: Cell type deconvolution from Bulk RNA-seq data
3.2 years ago by
asalimih
▴ 60
0
votes
1
reply
2.1k
views
Comment:
Comment: bedtools getfasta concatenating sequences
3.2 years ago by
asalimih
▴ 60
0
votes
3
replies
2.1k
views
bedtools getfasta concatenating sequences
bedtools
getfasta
updated 3.2 years ago by
Juke34
8.9k • written 3.2 years ago by
asalimih
▴ 60
0
votes
2
replies
1.7k
views
Answer:
Answer: How to execute one command on all files within a directory
3.2 years ago by
asalimih
▴ 60
0
votes
0
replies
4.3k
views
Comment:
Comment: Getting exon sequences for all human genes
3.2 years ago by
asalimih
▴ 60
0
votes
0
replies
6.6k
views
Comment:
Comment: Exon coordinates and sequence
3.2 years ago by
asalimih
▴ 60
1
vote
1
reply
785
views
Refseq annotation for processed/unprocessed Pseudogenes
refseq
pseudogene
annotation
genomics
updated 3.2 years ago by
GenoMax
147k • written 3.2 years ago by
asalimih
▴ 60
0
votes
0
replies
1.3k
views
Comment:
Comment: pseudogenes and their parent gene common regions
3.2 years ago by
asalimih
▴ 60
0
votes
0
replies
1.3k
views
Comment:
Comment: pseudogenes and their parent gene common regions
3.2 years ago by
asalimih
▴ 60
4
votes
4
replies
1.3k
views
pseudogenes and their parent gene common regions
calling
pseudogene
genomics
variant
3.2 years ago by
asalimih
▴ 60
0
votes
1
reply
1.0k
views
Comment:
Comment: tool or database to convert Gene ID to genomic position
3.2 years ago by
asalimih
▴ 60
3
votes
3
replies
1.0k
views
tool or database to convert Gene ID to genomic position
hg38
gene
conversion
id
updated 3.2 years ago by
GenoMax
147k • written 3.2 years ago by
asalimih
▴ 60
0
votes
1
reply
1.5k
views
Comment:
C: limma voom normalization of train and test set
4.2 years ago by
asalimih
▴ 60
0
votes
3
replies
1.5k
views
limma voom normalization of train and test set
limma
machine learning
RNA-Seq
data leakage
4.2 years ago by
asalimih
▴ 60
0
votes
1
reply
11k
views
Comment:
C: GSEA preranking metric for RNA Seq
4.7 years ago by
asalimih
▴ 60
1
vote
0
replies
22k
views
Answer:
A: Microarray: How To Select One Of Multiple Probes Corresponding To A Gene
5.2 years ago by
asalimih
▴ 60
0
votes
1
reply
2.1k
views
Comment:
C: frma normalization function not working on ExpressionFeatureSet object
5.2 years ago by
asalimih
▴ 60
0
votes
1
reply
2.1k
views
Comment:
C: frma normalization function not working on ExpressionFeatureSet object
5.2 years ago by
asalimih
▴ 60
0
votes
1
reply
2.1k
views
Comment:
C: frma normalization function not working on ExpressionFeatureSet object
5.2 years ago by
asalimih
▴ 60
4
votes
10
replies
2.1k
views
frma normalization function not working on ExpressionFeatureSet object
microarray
normalization
frma
preprocess
rma
updated 5.2 years ago by
Kevin Blighe
88k • written 5.2 years ago by
asalimih
▴ 60
1
vote
0
replies
2.1k
views
Comment:
C: frma normalization function not working on ExpressionFeatureSet object
5.2 years ago by
asalimih
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Integration of Microarray datasets with different platforms and biological group
5.3 years ago by
asalimih
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Integration of Microarray datasets with different platforms and biological group
5.3 years ago by
asalimih
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Integration of Microarray datasets with different platforms and biological group
5.3 years ago by
asalimih
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Integration of Microarray datasets with different platforms and biological group
5.3 years ago by
asalimih
▴ 60
6
votes
10
replies
2.0k
views
Integration of Microarray datasets with different platforms and biological groups
limma
microarray
DEA
batch-effect
updated 7 months ago by
Ram
44k • written 5.3 years ago by
asalimih
▴ 60
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