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Comment: Comment: Snakemake - pipeline shut down without error
5 weeks ago by Shred ★ 1.5k
1
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1
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358
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Comment: Comment: human_variation_vcf
6 weeks ago by Shred ★ 1.5k
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1
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358
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Comment: Comment: human_variation_vcf
6 weeks ago by Shred ★ 1.5k
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1.0k
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Comment: Comment: RNA-Seq mutation calling without germline data
7 weeks ago by Shred ★ 1.5k
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1.0k
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Comment: Comment: RNA-Seq mutation calling without germline data
7 weeks ago by Shred ★ 1.5k
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1
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1.0k
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Answer: Answer: RNA-Seq mutation calling without germline data
7 weeks ago by Shred ★ 1.5k
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1
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490
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Answer: Answer: CIBERSORTX disable quantile normalization
9 weeks ago by Shred ★ 1.5k
0
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0
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503
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Comment: Comment: RNA-seq anlaysis > coding region vs. non coding region
3 months ago by Shred ★ 1.5k
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503
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Answer: Answer: RNA-seq anlaysis > coding region vs. non coding region
updated 3 months ago by 44k • written 3 months ago by ★ 1.5k
1
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1
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527
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Answer: Answer: input for gatk VariantAnnotator --dbsnp
4 months ago by Shred ★ 1.5k
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0
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395
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Answer: Answer: RNA-seq, TMM and rRNA counts. Should rRNA genes be removed prior to DE analysis?
4 months ago by Shred ★ 1.5k
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0
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256
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Comment: Comment: VCF file GL field confusion
4 months ago by Shred ★ 1.5k
2
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0
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351
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Comment: Comment: dbSNP download and merge to my data
5 months ago by Shred ★ 1.5k
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2
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3.0k
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Comment: Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
5 months ago by Shred ★ 1.5k
4
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7
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3.0k
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Tool: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
Ensembl biomart annotation
5 months ago by Shred ★ 1.5k
0
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1
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393
views
Answer: Answer: Help with Base quality Score Recalibration (BQSR) using GATK
7 months ago by Shred ★ 1.5k
1
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0
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615
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Comment: Comment: Pearson correlation between Gene and clinical parameters
8 months ago by Shred ★ 1.5k
0
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0
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615
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Comment: Comment: Pearson correlation between Gene and clinical parameters
8 months ago by Shred ★ 1.5k
1
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1
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615
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Answer: Answer: Pearson correlation between Gene and clinical parameters
8 months ago by Shred ★ 1.5k
0
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0
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391
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Comment: Comment: seaborn dispersion graph
8 months ago by Shred ★ 1.5k
0
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0
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454
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Comment: Comment: How to show that correlation from one method is more significant than other meth
9 months ago by Shred ★ 1.5k
0
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1
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454
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Comment: Comment: How to show that correlation from one method is more significant than other meth
9 months ago by Shred ★ 1.5k
0
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1
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504
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Comment: Comment: Snakemake paralellize
9 months ago by Shred ★ 1.5k
0
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0
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689
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Comment: Comment: How to find SNP locations in assemblies other than hg38
9 months ago by Shred ★ 1.5k
1
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0
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368
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Answer: Answer: Searching for a specific somatic mutation in Illumina data
10 months ago by Shred ★ 1.5k
1
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0
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398
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Answer: Answer: Statistical analysisi in DESeq2 with different condition
10 months ago by Shred ★ 1.5k
0
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0
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720
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by Shred ★ 1.5k
1
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1
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720
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by Shred ★ 1.5k
0
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1
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720
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Answer: Answer: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by Shred ★ 1.5k
0
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1
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630
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Comment: Comment: How to identify regions of similarity/identity that are exclusive for a group wi
11 months ago by Shred ★ 1.5k
0
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1
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732
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Comment: Comment: GO, KEGG, GSEA analysis with ~5 DEGs
11 months ago by Shred ★ 1.5k
1
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1
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1.5k
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Comment: Comment: Data preparation for a ML model
12 months ago by Shred ★ 1.5k
0
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1
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1.5k
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Comment: Comment: Data preparation for a ML model
12 months ago by Shred ★ 1.5k
2
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1
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547
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Answer: Answer: Proper HTSeq usage on bacterial genome. Don't quite understand --t
13 months ago by Shred ★ 1.5k
4
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1
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735
views
Answer: Answer: Where to find info on VCF file format?
14 months ago by Shred ★ 1.5k
0
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1
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942
views
Comment: Comment: How to change from gene_id to GeneID/EntrezID using R
14 months ago by Shred ★ 1.5k
0
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1
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1.1k
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Comment: Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
14 months ago by Shred ★ 1.5k
0
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0
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796
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Comment: Comment: Can we use exon- counts to calculate coverage?
14 months ago by Shred ★ 1.5k
0
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1
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837
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Comment: Comment: Integrated analysis of RNA-seq datasets
15 months ago by Shred ★ 1.5k
2
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0
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837
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Answer: Answer: Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
15 months ago by Shred ★ 1.5k
1
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0
replies
923
views
Comment: Comment: Keplen Meyer Curve Dropping to zero
15 months ago by Shred ★ 1.5k
2
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1
reply
923
views
Answer: Answer: Keplen Meyer Curve Dropping to zero
15 months ago by Shred ★ 1.5k
0
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1
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923
views
Comment: Comment: Keplen Meyer Curve Dropping to zero
15 months ago by Shred ★ 1.5k
0
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1
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552
views
Comment: Comment: python 'gnomAD_DB'
16 months ago by Shred ★ 1.5k
0
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0
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838
views
Answer: Answer: GATK not working when clone to VM
16 months ago by Shred ★ 1.5k
3
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1
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783
views
Answer: Answer: Develop model based on differentially expressed genes
16 months ago by Shred ★ 1.5k
0
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0
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840
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Answer: Answer: Lollipop plots for structural variation coordinates
16 months ago by Shred ★ 1.5k
1
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0
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624
views
Comment: Comment: Estimating sample size from bulk RNAseq data
16 months ago by Shred ★ 1.5k
0
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1
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2.3k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
17 months ago by Shred ★ 1.5k
0
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0
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1.3k
views
Comment: Comment: TPM normalization but library size isn't equal to 1 million
17 months ago by Shred ★ 1.5k
254 results • Page 1 of 6
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