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862
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Comment: Comment: how to decide the if the IDR result is good or not
24 months ago by dew ▴ 10
1
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2
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862
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how to decide the if the IDR result is good or not
IDR ATAC-seq
updated 23 months ago by 44k • written 24 months ago by ▴ 10
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0
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836
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Comment: Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
2.1 years ago by dew ▴ 10
1
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2
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836
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Is there any recommended RNAseq ranking for DEGs/driver genes
Driver RNA-Seq Ranking
2.1 years ago by dew ▴ 10
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0
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2.2k
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Comment: Comment: how to speed up snakemake workflow
2.1 years ago by dew ▴ 10
6
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7
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2.2k
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how to speed up snakemake workflow
workflow RNA-Seq snakemake
2.1 years ago by dew ▴ 10
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0
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2.2k
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Comment: Comment: how to speed up snakemake workflow
2.1 years ago by dew ▴ 10
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1
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2.2k
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Comment: Comment: how to speed up snakemake workflow
2.1 years ago by dew ▴ 10
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0
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944
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.2 years ago by dew ▴ 10
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0
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944
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.2 years ago by dew ▴ 10
3
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4
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944
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Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 10
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0
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711
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Comment: Comment: Driver genes and top 10/20/etc DEGs
2.2 years ago by dew ▴ 10
1
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2
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711
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Driver genes and top 10/20/etc DEGs
RNAseq Driver DEGs genes
2.2 years ago by dew ▴ 10
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0
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621
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Comment: Comment: how to deal with strong sample heterogenous effects in RNAseq
2.2 years ago by dew ▴ 10
2
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2
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621
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how to deal with strong sample heterogenous effects in RNAseq
batch-effect RNA-Seq
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 10
0
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0
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584
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DWLS error Dmat and dvec are incompatible!
deconvolution RNA-Seq DWLS
2.2 years ago by dew ▴ 10
0
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0
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774
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Comment: Comment: recommend tools for scRNAseq cell type annotation
2.2 years ago by dew ▴ 10
1
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2
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774
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recommend tools for scRNAseq cell type annotation
type annotation cell scRNAseq
2.2 years ago by dew ▴ 10
0
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1
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1.3k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
2.3 years ago by dew ▴ 10
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0
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1.3k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
2.3 years ago by dew ▴ 10
0
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1
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1.3k
views
Comment: Comment: possible reasons that very few significant DEGs from RNAseq
2.3 years ago by dew ▴ 10
8
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8
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1.3k
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possible reasons that very few significant DEGs from RNAseq
RNA-Seq DEGs sigificant
updated 2.3 years ago by 86k • written 2.3 years ago by ▴ 10
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0
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656
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Comment: Comment: how to decide the strandness of the RNAseq data
2.3 years ago by dew ▴ 10
1
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2
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656
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how to decide the strandness of the RNAseq data
strandness RNA-Seq
2.3 years ago by dew ▴ 10
0
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0
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444
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Like hood ration test vs t test
t-test RNA-Seq LRT
updated 2.2 years ago by 44k • written 2.4 years ago by ▴ 10
2
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1
reply
480
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DEGs generate when has a background sample
RNA-Seq DEGs
updated 2.4 years ago by 86k • written 2.4 years ago by ▴ 10
3
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4
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1.3k
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how much difference between raw counts value and the TPM value
RNA-Seq TPM
updated 2.4 years ago by 86k • written 2.4 years ago by ▴ 10
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1
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1.3k
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Comment: Comment: how much difference between raw counts value and the TPM value
2.4 years ago by dew ▴ 10
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0
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392
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how to deal with correlation map with multi repeats for one group
repeats map correlation RNA-Seq multi
2.5 years ago by dew ▴ 10
2
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4
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1.3k
views
correlation among RNAseq and proteomics analysis
RNA-Seq proteomics analysis correlation
updated 2.5 years ago by ▴ 430 • written 2.5 years ago by ▴ 10
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0
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1.3k
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Comment: Comment: correlation among RNAseq and proteomics analysis
2.5 years ago by dew ▴ 10
0
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0
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661
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Comment: Comment: differential expressed proteins cutoff threshold
2.5 years ago by dew ▴ 10
2
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2
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661
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differential expressed proteins cutoff threshold
expressed differential proteomics
2.5 years ago by dew ▴ 10
0
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0
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400
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multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
2.6 years ago by dew ▴ 10
6
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3
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1.2k
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq annotation workflow function
updated 2.6 years ago by ▴ 60 • written 2.6 years ago by ▴ 10
2
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1
reply
762
views
choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq analysis correlation
updated 2.6 years ago by ▴ 70 • written 2.6 years ago by ▴ 10
1
vote
1
reply
485
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heatmap with multi NA/0 value
RNA-Seq NA heatmap
updated 2.6 years ago by 44k • written 2.6 years ago by ▴ 10
1
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1
reply
543
views
TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq normalization heatmap
updated 2.6 years ago by 86k • written 2.6 years ago by ▴ 10
4
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3
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1.4k
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Number of gene for display in the complex heatmap
RNA-Seq complex heatmap
2.6 years ago by dew ▴ 10
0
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0
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1.4k
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Answer: Answer: Number of gene for display in the complex heatmap
2.6 years ago by dew ▴ 10
0
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0
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1.2k
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Comment: Comment: protein ID convert to gene name ID
2.7 years ago by dew ▴ 10
5
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6
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1.2k
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protein ID convert to gene name ID
proteomics
updated 19 months ago by 44k • written 2.7 years ago by ▴ 10
0
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0
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1.2k
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Comment: Comment: protein ID convert to gene name ID
2.7 years ago by dew ▴ 10
0
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0
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10k
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Comment: Comment: Working with GTEX dataset
updated 2.2 years ago by 44k • written 2.7 years ago by ▴ 10
0
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0
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476
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C7 msigdb immune annotation results digging
annotation Misgdb RNA-Seq
2.7 years ago by dew ▴ 10
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0
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1.3k
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Comment: Comment: DESeq2 after GSVA "some values in assay are negative"
2.8 years ago by dew ▴ 10
1
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2
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1.3k
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DESeq2 after GSVA "some values in assay are negative"
GSVA DESeq2 RNA-seq
2.8 years ago by dew ▴ 10
0
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0
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961
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
2.8 years ago by dew ▴ 10
0
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1
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961
views
Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
2.8 years ago by dew ▴ 10
3
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4
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961
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featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts RNA-Seq
updated 2.8 years ago by 6.2k • written 2.8 years ago by ▴ 10
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