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comments
0
votes
0
replies
980
views
Comment:
Comment: how to decide the if the IDR result is good or not
2.3 years ago by
dew
▴ 10
1
vote
2
replies
980
views
how to decide the if the IDR result is good or not
IDR
ATAC-seq
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
dew
▴ 10
0
votes
0
replies
917
views
Comment:
Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
2.4 years ago by
dew
▴ 10
1
vote
2
replies
917
views
Is there any recommended RNAseq ranking for DEGs/driver genes
Driver
RNA-Seq
Ranking
2.4 years ago by
dew
▴ 10
0
votes
0
replies
2.4k
views
Comment:
Comment: how to speed up snakemake workflow
2.4 years ago by
dew
▴ 10
6
votes
7
replies
2.4k
views
how to speed up snakemake workflow
workflow
RNA-Seq
snakemake
2.4 years ago by
dew
▴ 10
0
votes
0
replies
2.4k
views
Comment:
Comment: how to speed up snakemake workflow
2.5 years ago by
dew
▴ 10
0
votes
1
reply
2.4k
views
Comment:
Comment: how to speed up snakemake workflow
2.5 years ago by
dew
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.5 years ago by
dew
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.5 years ago by
dew
▴ 10
3
votes
4
replies
1.0k
views
Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 2.5 years ago by
Ram
45k • written 2.5 years ago by
dew
▴ 10
0
votes
0
replies
790
views
Comment:
Comment: Driver genes and top 10/20/etc DEGs
2.5 years ago by
dew
▴ 10
1
vote
2
replies
790
views
Driver genes and top 10/20/etc DEGs
RNAseq
Driver
DEGs
genes
2.5 years ago by
dew
▴ 10
0
votes
0
replies
696
views
Comment:
Comment: how to deal with strong sample heterogenous effects in RNAseq
2.5 years ago by
dew
▴ 10
2
votes
2
replies
696
views
how to deal with strong sample heterogenous effects in RNAseq
batch-effect
RNA-Seq
updated 2.5 years ago by
Ram
45k • written 2.5 years ago by
dew
▴ 10
0
votes
1
reply
784
views
DWLS error Dmat and dvec are incompatible!
deconvolution
RNA-Seq
DWLS
updated 9 weeks ago by
Ana
▴ 10 • written 2.5 years ago by
dew
▴ 10
0
votes
0
replies
855
views
Comment:
Comment: recommend tools for scRNAseq cell type annotation
2.5 years ago by
dew
▴ 10
1
vote
2
replies
855
views
recommend tools for scRNAseq cell type annotation
type
annotation
cell
scRNAseq
2.5 years ago by
dew
▴ 10
0
votes
1
reply
1.5k
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
2.6 years ago by
dew
▴ 10
0
votes
0
replies
1.5k
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
2.6 years ago by
dew
▴ 10
0
votes
1
reply
1.5k
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
2.6 years ago by
dew
▴ 10
8
votes
8
replies
1.5k
views
possible reasons that very few significant DEGs from RNAseq
RNA-Seq
DEGs
sigificant
updated 2.6 years ago by
ATpoint
88k • written 2.6 years ago by
dew
▴ 10
0
votes
0
replies
786
views
Comment:
Comment: how to decide the strandness of the RNAseq data
2.6 years ago by
dew
▴ 10
1
vote
2
replies
786
views
how to decide the strandness of the RNAseq data
strandness
RNA-Seq
2.6 years ago by
dew
▴ 10
0
votes
0
replies
491
views
Like hood ration test vs t test
t-test
RNA-Seq
LRT
updated 2.5 years ago by
Ram
45k • written 2.7 years ago by
dew
▴ 10
2
votes
1
reply
542
views
DEGs generate when has a background sample
RNA-Seq
DEGs
updated 2.8 years ago by
ATpoint
88k • written 2.8 years ago by
dew
▴ 10
3
votes
4
replies
1.4k
views
how much difference between raw counts value and the TPM value
RNA-Seq
TPM
updated 2.8 years ago by
ATpoint
88k • written 2.8 years ago by
dew
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: how much difference between raw counts value and the TPM value
2.8 years ago by
dew
▴ 10
0
votes
0
replies
454
views
how to deal with correlation map with multi repeats for one group
repeats
map
correlation
RNA-Seq
multi
2.8 years ago by
dew
▴ 10
2
votes
4
replies
1.4k
views
correlation among RNAseq and proteomics analysis
RNA-Seq
proteomics
analysis
correlation
updated 2.9 years ago by
tomas4482
▴ 430 • written 2.9 years ago by
dew
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: correlation among RNAseq and proteomics analysis
2.9 years ago by
dew
▴ 10
0
votes
0
replies
740
views
Comment:
Comment: differential expressed proteins cutoff threshold
2.9 years ago by
dew
▴ 10
2
votes
2
replies
740
views
differential expressed proteins cutoff threshold
expressed
differential
proteomics
2.9 years ago by
dew
▴ 10
0
votes
0
replies
445
views
multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
2.9 years ago by
dew
▴ 10
6
votes
3
replies
1.4k
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq
annotation
workflow
function
updated 2.9 years ago by
MB
▴ 60 • written 2.9 years ago by
dew
▴ 10
2
votes
1
reply
853
views
choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq
analysis
correlation
updated 2.9 years ago by
bioinfo_ga
▴ 70 • written 2.9 years ago by
dew
▴ 10
1
vote
1
reply
556
views
heatmap with multi NA/0 value
RNA-Seq
NA
heatmap
updated 2.9 years ago by
Ram
45k • written 2.9 years ago by
dew
▴ 10
1
vote
1
reply
607
views
TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq
normalization
heatmap
updated 3.0 years ago by
ATpoint
88k • written 3.0 years ago by
dew
▴ 10
4
votes
3
replies
1.7k
views
Number of gene for display in the complex heatmap
RNA-Seq
complex
heatmap
3.0 years ago by
dew
▴ 10
0
votes
0
replies
1.7k
views
Answer:
Answer: Number of gene for display in the complex heatmap
3.0 years ago by
dew
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: protein ID convert to gene name ID
3.0 years ago by
dew
▴ 10
5
votes
6
replies
1.4k
views
protein ID convert to gene name ID
proteomics
updated 23 months ago by
Ram
45k • written 3.0 years ago by
dew
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: protein ID convert to gene name ID
3.0 years ago by
dew
▴ 10
0
votes
0
replies
11k
views
Comment:
Comment: Working with GTEX dataset
updated 2.5 years ago by
Ram
45k • written 3.1 years ago by
dew
▴ 10
0
votes
0
replies
514
views
C7 msigdb immune annotation results digging
annotation
Misgdb
RNA-Seq
3.1 years ago by
dew
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: DESeq2 after GSVA "some values in assay are negative"
3.1 years ago by
dew
▴ 10
1
vote
2
replies
1.4k
views
DESeq2 after GSVA "some values in assay are negative"
GSVA
DESeq2
RNA-seq
3.1 years ago by
dew
▴ 10
0
votes
0
replies
1.1k
views
Comment:
Comment: featureCounts results has many psedugenes(ENSG***) together with genes
3.1 years ago by
dew
▴ 10
0
votes
1
reply
1.1k
views
Comment:
Comment: featureCounts results has many psedugenes(ENSG***) together with genes
3.1 years ago by
dew
▴ 10
3
votes
4
replies
1.1k
views
featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts
RNA-Seq
updated 3.1 years ago by
iraun
6.2k • written 3.1 years ago by
dew
▴ 10
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