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0
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539
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Comment: Comment: Why counting by diffbind and featurecounts differ?
7 weeks ago by Ian 6.1k
0
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0
replies
614
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by Ian 6.1k
1
vote
1
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614
views
Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by Ian 6.1k
7
votes
8
replies
614
views
Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, and intron only
rna-seq featurecounts
7 weeks ago by Ian 6.1k
1
vote
0
replies
614
views
Answer: Answer: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by Ian 6.1k
1
vote
1
reply
614
views
Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by Ian 6.1k
0
votes
0
replies
614
views
Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by Ian 6.1k
0
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0
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5.4k
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Comment: Comment: How to use output from GeneMark-ES to identify function?
7 weeks ago by Ian 6.1k
1
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0
replies
555
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Comment: Comment: Trying to understand basic DiffBind usage
9 weeks ago by Ian 6.1k
1
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1
reply
555
views
Answer: Answer: Trying to understand basic DiffBind usage
10 weeks ago by Ian 6.1k
0
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0
replies
638
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Comment: Comment: Confirmation required on how DiffBind generates union of regions (min. 1bp overl
3 months ago by Ian 6.1k
0
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1
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638
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Comment: Comment: Confirmation required on how DiffBind generates union of regions (min. 1bp overl
4 months ago by Ian 6.1k
0
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4
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638
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Confirmation required on how DiffBind generates union of regions (min. 1bp overlap or gap)?
DiffBind
4 weeks ago by Ian 6.1k
0
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1
reply
734
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Comment: Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
6 months ago by Ian 6.1k
0
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0
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647
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Answer: Answer: How to make the Input track flat for ChIP-seq
10 months ago by Ian 6.1k
0
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0
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808
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
13 months ago by Ian 6.1k
13
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6
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3.7k
views
Are there mm39/GRCm39 blacklist regions?
blacklist
updated 15 months ago by 13k • written 2.5 years ago by 6.1k
1
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1
reply
1.1k
views
How to convert a HG19 Hi-C hic file to HG38?
Hi-C hic
updated 17 months ago by • 0 • written 3.4 years ago by 6.1k
0
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0
replies
1.3k
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Comment: Comment: Custom genome installation in SigProfileMatrixGenerator
19 months ago by Ian 6.1k
0
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1
reply
948
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Answer: Answer: macs2 for centromere chip-seq peak calling
20 months ago by Ian 6.1k
0
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0
replies
1.3k
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Comment: Comment: ChIP-seq problem
23 months ago by Ian 6.1k
0
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1
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1.3k
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Comment: Comment: ChIP-seq problem
23 months ago by Ian 6.1k
0
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1
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1.3k
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Answer: Answer: How to create bigwig file in galaxy after MACS procedure(Chip Seq)
23 months ago by Ian 6.1k
1
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1
reply
1.4k
views
Answer: Answer: Upregulated and downregulated genes from ChIP-seq data
23 months ago by Ian 6.1k
0
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0
replies
3.7k
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Comment: Comment: Are there mm39/GRCm39 blacklist regions?
2.5 years ago by Ian 6.1k
0
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0
replies
3.7k
views
Comment: Comment: Are there mm39/GRCm39 blacklist regions?
2.5 years ago by Ian 6.1k
0
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1
reply
1.6k
views
Comment: Comment: How to count mapping rates for ChIP-seq?
2.5 years ago by Ian 6.1k
3
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2
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5.4k
views
Answer: Answer: How to use output from GeneMark-ES to identify function?
3.0 years ago by Ian 6.1k
1
vote
3
replies
1.3k
views
Custom genome installation in SigProfileMatrixGenerator
genome custom SigProfilerMatrixGenerator
19 months ago by Ian 6.1k
1
vote
1
reply
1.3k
views
Answer: Answer: Custom genome installation in SigProfileMatrixGenerator
3.5 years ago by Ian 6.1k
1
vote
3
replies
1.3k
views
Tool/method to calculate the sequence context of variants?
sequence context variant
3.6 years ago by Ian 6.1k
1
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0
replies
1.3k
views
Answer: Answer: Tool/method to calculate the sequence context of variants?
3.6 years ago by Ian 6.1k
0
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0
replies
1.3k
views
Comment: Comment: Tool/method to calculate the sequence context of variants?
3.6 years ago by Ian 6.1k
3
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3
replies
2.5k
views
Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
deeptools
4.1 years ago by Ian 6.1k
0
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1
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2.5k
views
Comment: C: Comparing input read subtracted ChIP-read profiles using Deeptools2
4.1 years ago by Ian 6.1k
8
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2
replies
6.6k
views
Bedtools Intersectbed
bedtools intersect coverage coverage
updated 4.2 years ago by 20 • written 13.0 years ago by 6.1k
7
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0
replies
66k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 13.6 years ago by 6.1k
1
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0
replies
66k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 13.6 years ago by 6.1k
3
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1
reply
7.7k
views
Tool: Weeder 2.0 - motif discovery tool updated
motif-discovery chip-seq weeder
updated 17 months ago by 44k • written 10.1 years ago by 6.1k
6
votes
0
replies
5.0k
views
Answer: A: MACS2 Peak Calling : Different number of peaks for each replicate
updated 4.9 years ago by 44k • written 8.8 years ago by 6.1k
0
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0
replies
5.1k
views
Answer: A: DiffBind - DESeq2 Consensus peakset
updated 4.9 years ago by 44k • written 10.5 years ago by 6.1k
0
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0
replies
5.2k
views
Answer: A: how to calculate distance between CpG site and TSS?
updated 4.9 years ago by 44k • written 10.5 years ago by 6.1k
0
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1
reply
25k
views
Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.9 years ago by 44k • written 10.6 years ago by 6.1k
1
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0
replies
9.7k
views
Answer: A: Read depth and Hi-C resolution
updated 4.9 years ago by 44k • written 8.8 years ago by 6.1k
0
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1
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11k
views
Answer: A: Difference between UCSC and Ensembl genomes
updated 4.9 years ago by 44k • written 8.8 years ago by 6.1k
0
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0
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25k
views
Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.9 years ago by 44k • written 10.6 years ago by 6.1k
2
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1
reply
1.3k
views
Answer: A: found non conserved regions between 2 genomes
4.9 years ago by Ian 6.1k
2
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0
replies
3.3k
views
Answer: A: Program For Filtering Solid Reads
updated 4.9 years ago by 44k • written 11.5 years ago by 6.1k
0
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1
reply
21k
views
Answer: A: Error when trying to use samtools to convert a sam files to a bam file
updated 4.9 years ago by 44k • written 8.9 years ago by 6.1k
0
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0
replies
8.1k
views
Answer: A: Doubts related to MACS tool
updated 5.0 years ago by 44k • written 9.0 years ago by 6.1k
467 results • Page 1 of 10
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