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24
votes
9
replies
18k
views
Extracting Paired-End Reads Sitting In Different Chromosomes
samtools paired
updated 6.4 years ago by ▴ 460 • written 12.8 years ago by 6.1k
5
votes
4
replies
2.6k
views
Method for creating an EMBL formatted annotated sequence?
sequence ENA EMBL
6.7 years ago by Ian 6.1k
2
votes
0
replies
2.6k
views
Answer: A: Method for creating an EMBL formatted annotated sequence?
6.7 years ago by Ian 6.1k
0
votes
2
replies
3.6k
views
Extracting Ucsc Canonical Gene Information
ucsc
updated 6.8 years ago by 20 • written 13.3 years ago by 6.1k
0
votes
0
replies
2.0k
views
Answer: A: What shall I do with this RNA-seq data that have no replicates?
6.9 years ago by Ian 6.1k
0
votes
0
replies
3.7k
views
Comment: C: Biological significance of Fold_enrichment in macs2
6.9 years ago by Ian 6.1k
2
votes
0
replies
7.3k
views
Answer: A: How to repair *all* problems identified by FastQC?
7.0 years ago by Ian 6.1k
2
votes
1
reply
3.7k
views
Answer: A: Biological significance of Fold_enrichment in macs2
7.0 years ago by Ian 6.1k
0
votes
0
replies
1.5k
views
Answer: A: Features for detection of gene.
7.0 years ago by Ian 6.1k
1
vote
0
replies
4.2k
views
Comment: C: How can I locate motif in DNA sequence.
7.0 years ago by Ian 6.1k
1
vote
0
replies
9.3k
views
Comment: C: BagFoot TF foot printing
7.1 years ago by Ian 6.1k
9
votes
1
reply
21k
views
Answer: A: Normalized Bigwig Files
7.3 years ago by Ian 6.1k
1
vote
1
reply
8.7k
views
Comment: C: How to choose Trimmomatic's parameter 'MINLEN '?
7.5 years ago by Ian 6.1k
0
votes
0
replies
3.4k
views
Answer: A: Differential chip-seq peak calling using macs2
7.5 years ago by Ian 6.1k
4
votes
1
reply
8.7k
views
Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
7.5 years ago by Ian 6.1k
2
votes
0
replies
3.2k
views
Answer: A: ChIP-seq Input replicate correlation
7.5 years ago by Ian 6.1k
1
vote
0
replies
4.6k
views
Comment: C: Peak calling for broad histone-modification regions
7.5 years ago by Ian 6.1k
2
votes
1
reply
6.7k
views
Answer: A: Filter MACS peaks by enrichment/FDR?
7.5 years ago by Ian 6.1k
0
votes
1
reply
4.0k
views
Comment: C: prepare pair-ended reads for peak calling
7.6 years ago by Ian 6.1k
0
votes
1
reply
4.0k
views
Comment: C: prepare pair-ended reads for peak calling
7.7 years ago by Ian 6.1k
0
votes
1
reply
30k
views
Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.7 years ago by Ian 6.1k
0
votes
1
reply
2.8k
views
Comment: C: How to extend variable length intervals to the same final length?
7.7 years ago by Ian 6.1k
0
votes
0
replies
2.8k
views
Comment: C: How to extend variable length intervals to the same final length?
7.7 years ago by Ian 6.1k
5
votes
6
replies
2.8k
views
How to extend variable length intervals to the same final length?
bedtools slop intervals footprint
updated 7.7 years ago by 36k • written 7.7 years ago by 6.1k
1
vote
1
reply
2.0k
views
Answer: A: ChIP on chip array cover genome or promoter regions?
7.8 years ago by Ian 6.1k
3
votes
1
reply
7.8k
views
Answer: A: Paired end and single end with MACS2
7.8 years ago by Ian 6.1k
0
votes
1
reply
2.0k
views
Comment: C: ChIP on chip array cover genome or promoter regions?
7.8 years ago by Ian 6.1k
16
votes
1
reply
252k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
7.9 years ago by Ian 6.1k
0
votes
0
replies
1.2k
views
Answer: A: Chip Seq controls
8.0 years ago by Ian 6.1k
1
vote
1
reply
2.3k
views
Answer: A: How analyse chip-exo paired read data and get BigWig or Peaks called?
8.0 years ago by Ian 6.1k
0
votes
1
reply
5.4k
views
Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
8.0 years ago by Ian 6.1k
0
votes
2
replies
4.6k
views
Comment: C: call differential peaks H3K27ac
8.0 years ago by Ian 6.1k
2
votes
1
reply
4.6k
views
Answer: A: call differential peaks H3K27ac
8.0 years ago by Ian 6.1k
1
vote
0
replies
5.5k
views
Answer: A: Tag size in MACS and MACS2
8.1 years ago by Ian 6.1k
1
vote
0
replies
5.1k
views
Comment: C: Trim adapter sequence for single-end
8.2 years ago by Ian 6.1k
6
votes
3
replies
9.0k
views
Tool: Masc - A Tool For Calculating Mean Fragment Size For Chip-Seq Peak Calling Analysis
chip-seq
updated 17 months ago by 44k • written 11.8 years ago by 6.1k
0
votes
0
replies
1.6k
views
Answer: A: TFBS finding in whole genome
8.3 years ago by Ian 6.1k
5
votes
0
replies
34k
views
Answer: A: Is Paired End analysis possible with FASTQC?
8.5 years ago by Ian 6.1k
0
votes
1
reply
3.0k
views
Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.6 years ago by Ian 6.1k
0
votes
0
replies
3.0k
views
Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.6 years ago by Ian 6.1k
3
votes
5
replies
3.0k
views
Problem viewing a bigWig file on UCSC browser - any debugging solutions?
ucsc bigwig
8.6 years ago by Ian 6.1k
1
vote
0
replies
6.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.7 years ago by Ian 6.1k
0
votes
0
replies
5.9k
views
Comment: C: Do I need to remove adapter if FastQC showed no adapter content.
8.7 years ago by Ian 6.1k
1
vote
1
reply
53k
views
Answer: A: Visualization of ChIP-seq data using Heatmaps
8.7 years ago by Ian 6.1k
3
votes
3
replies
68k
views
Answer: A: How To Convert Gencode Gtf Into Bed Format ?
updated 8.7 years ago by 36k • written 12.1 years ago by 6.1k
0
votes
0
replies
3.9k
views
Comment: C: 'effective genome size' , how precisse does it have to be?
8.7 years ago by Ian 6.1k
0
votes
0
replies
2.2k
views
Answer: Answer: Does sequencing depth affect MACS2 q-values?
updated 2.4 years ago by 44k • written 8.8 years ago by 6.1k
1
vote
1
reply
6.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.8 years ago by Ian 6.1k
0
votes
0
replies
8.2k
views
Comment: C: Doubts related to MACS tool
8.9 years ago by Ian 6.1k
0
votes
1
reply
3.9k
views
Answer: A: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
9.0 years ago by Ian 6.1k
467 results • Page 3 of 10
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