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Comment: C: Possible augmented reality tools for bioinformatics and current problems
9.0 years ago by Ian 6.1k
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2.1k
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Answer: A: How to test for enrichment of three bed files that 'may' form a complex
9.0 years ago by Ian 6.1k
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4.0k
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Answer: A: Filtering fastq (by quality score and length), optimum criteria?
9.1 years ago by Ian 6.1k
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7.1k
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Answer: Answer: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 2.2 years ago by 44k • written 9.1 years ago by 6.1k
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0
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3.3k
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Answer: Answer: The way to compare ChIPSeq peaks enrichment level in different samples
updated 2.2 years ago by 44k • written 9.2 years ago by 6.1k
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1
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2.6k
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Answer: Answer: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 2.2 years ago by 44k • written 9.2 years ago by 6.1k
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1
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3.9k
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Comment: Comment: How to remove kmer profiles?
updated 2.2 years ago by 44k • written 9.2 years ago by 6.1k
26
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17
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8.2k
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8 follow
Tutorial: virtualenv - running Python based software in isolation
python virtualenv
updated 2.2 years ago by 44k • written 10.3 years ago by 6.1k
7
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3
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2.7k
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Differential methylation analysis: sequencing biological replicates versus pooled samples?
dma differential-methylation
updated 2.2 years ago by 44k • written 9.2 years ago by 6.1k
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1
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3.4k
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Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
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2
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3.4k
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Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
7
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6
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3.4k
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Best to overlap hundreds of BED files to one master BED file?
bed overlap intersect
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
2
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1
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6.7k
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Answer: Answer: MACS2 for K27me3 peak calling
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
1
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0
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3.3k
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Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
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0
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9.3k
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Answer: Answer: randomly shuffle BAM file
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
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0
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2.0k
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Answer: Answer: Chip-Chip peaks calling
updated 2.1 years ago by 44k • written 9.3 years ago by 6.1k
2
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1
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5.4k
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Answer: Answer: How to extract peak coordinates for chip-seq bedgraph file ?
updated 2.1 years ago by 44k • written 9.4 years ago by 6.1k
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0
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3.1k
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Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 2.0 years ago by 44k • written 9.4 years ago by 6.1k
0
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1
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1.8k
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Comment: Comment: Peak calling on FastX-collapser processed data
updated 23 months ago by 44k • written 9.5 years ago by 6.1k
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1
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1.8k
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Answer: Answer: Peak calling on FastX-collapser processed data
updated 23 months ago by 44k • written 9.5 years ago by 6.1k
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1
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7.1k
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Answer: Answer: Paired bowtie2: 91% overall alignment but 0.01% concordant - should I be worried
updated 22 months ago by 44k • written 9.5 years ago by 6.1k
4
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0
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3.7k
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Answer: Answer: How to add gene annotation to a UCSC assembly hub?
updated 2.5 years ago by 44k • written 9.7 years ago by 6.1k
8
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1
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3.7k
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How to add gene annotation to a UCSC assembly hub?
assembly hub gtf gff3 UCSC
updated 2.5 years ago by 44k • written 9.7 years ago by 6.1k
1
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0
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8.9k
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Answer: Answer: color a sequence alignment
updated 2.5 years ago by 44k • written 9.7 years ago by 6.1k
0
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1
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8.0k
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Answer: Answer: Top MACS peaks from ChIP-seq look identical to input
updated 2.5 years ago by 44k • written 9.7 years ago by 6.1k
0
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0
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2.3k
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Answer: Answer: how to peak caling the abnormal chipseq bam files against the input
updated 2.5 years ago by 44k • written 9.7 years ago by 6.1k
3
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5
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4.7k
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htseq-count problem with --samout option
htseq-count
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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0
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2.7k
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Comment: Comment: Galaxy and ProFTP
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
1
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1
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2.7k
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Answer: Answer: Galaxy and ProFTP
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
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0
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4.7k
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Comment: Comment: htseq-count problem with --samout option
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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2
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4.7k
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Comment: Comment: htseq-count problem with --samout option
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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1
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11k
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Comment: C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
9.8 years ago by Ian 6.1k
0
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1
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11k
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Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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0
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10k
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Comment: Comment: How do I view the height / distribution of ChIP-seq peaks?
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
1
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0
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10k
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Answer: Answer: How do I view the height / distribution of ChIP-seq peaks?
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
1
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0
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3.8k
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Answer: Answer: Chipseq data with Mock, Input And IP
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
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0
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3.1k
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Comment: C: Where are the different RAM versions of IGB in v8.3.0
9.8 years ago by Ian 6.1k
0
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0
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3.1k
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Comment: Comment: Where are the different RAM versions of IGB in v8.3.0
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
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0
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37k
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Comment: Comment: Remove mitochondrial reads from BAM files
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
12
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1
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37k
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Answer: Answer: Remove mitochondrial reads from BAM files
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
2
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0
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3.1k
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Answer: Answer: Where are the different RAM versions of IGB in v8.3.0
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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1
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2.4k
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Answer: Answer: grab signal from wig to bed file
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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0
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3.7k
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Comment: Comment: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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1
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3.7k
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Answer: Answer: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 2.6 years ago by 44k • written 9.8 years ago by 6.1k
0
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1
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3.3k
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Comment: Comment: Computational requirement to host a genome browser
updated 2.7 years ago by 44k • written 9.9 years ago by 6.1k
1
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1
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3.3k
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Answer: Answer: Computational requirement to host a genome browser
updated 2.7 years ago by 44k • written 9.9 years ago by 6.1k
0
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1
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3.6k
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Comment: Comment: How can I create a more accurate PWM?
updated 2.7 years ago by 44k • written 9.9 years ago by 6.1k
2
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0
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54k
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Answer: Answer: Venn/Euler Diagram Of Four Or More Sets
updated 2.7 years ago by 44k • written 10.0 years ago by 6.1k
4
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3
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9.0k
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Regular expression matching with Python and biopython SeqIO
regular-expression python biopython
updated 3.6 years ago by 44k • written 10.0 years ago by 6.1k
0
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0
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9.0k
views
Comment: Comment: Regular expression matching with Python and biopython SeqIO
updated 3.6 years ago by 44k • written 10.0 years ago by 6.1k
467 results • Page 4 of 10
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