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Answer: Answer: How does MACS handle read density normalization?
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
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0
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11k
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Comment: Comment: Comparing two ChIP-seq libraries
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
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0
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9.5k
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Comment: C: Association between bed files - statistical significance
10.0 years ago by Ian 6.1k
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1
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11k
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Comment: Comment: Comparing two ChIP-seq libraries
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
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0
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15k
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Answer: Answer: Identify gene symbols given a list of chromosome positions
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
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1
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9.5k
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Comment: C: Association between bed files - statistical significance
10.0 years ago by Ian 6.1k
2
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1
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11k
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Answer: Answer: Comparing two ChIP-seq libraries
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
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0
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2.8k
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Answer: Answer: Chip-seq common control for two treatments
updated 2.8 years ago by 44k • written 10.0 years ago by 6.1k
10
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0
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30k
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Answer: Answer: the difference between BED files and BedGraph files
updated 2.9 years ago by 44k • written 10.2 years ago by 6.1k
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0
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5.8k
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Answer: Answer: how to install macs and use it
updated 2.9 years ago by 44k • written 10.3 years ago by 6.1k
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0
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8.2k
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Comment: Comment: virtualenv - running Python based software in isolation
updated 2.9 years ago by 44k • written 10.3 years ago by 6.1k
0
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1
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3.9k
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Answer: Answer: Is correct finding unique reads with the flag -F 0x104?
updated 3.0 years ago by 44k • written 10.3 years ago by 6.1k
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0
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71k
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Comment: C: Convert SAM to BAM
10.3 years ago by Ian 6.1k
3
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1
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71k
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Answer: A: Convert SAM to BAM
10.3 years ago by Ian 6.1k
0
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0
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2.4k
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Answer: Answer: Using MACS for Mitochondrial Genome
updated 3.0 years ago by 44k • written 10.3 years ago by 6.1k
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0
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3.4k
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Comment: Comment: weird SAM flag explanation
updated 3.0 years ago by 44k • written 10.3 years ago by 6.1k
3
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0
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28k
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Answer: Answer: Meaning of Per base sequence content in FastQC
updated 3.0 years ago by 44k • written 10.4 years ago by 6.1k
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0
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6.5k
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Comment: Comment: Convert paired end bam file into bed of fragments
updated 3.0 years ago by 44k • written 10.4 years ago by 6.1k
0
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1
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5.5k
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Answer: Answer: Samtools: remove reads that are masked as duplicates
updated 3.0 years ago by 44k • written 10.4 years ago by 6.1k
1
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0
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6.7k
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Answer: Answer: Differential Histone Chip-Seq Analysis Without Replicates
updated 3.0 years ago by 44k • written 10.4 years ago by 6.1k
0
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0
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29k
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Comment: C: How To Do Normalization Of Two Chip-Seq Data?
10.4 years ago by Ian 6.1k
2
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1
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4.6k
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Answer: Answer: TSS file for D.melanogaster
updated 3.0 years ago by 44k • written 10.4 years ago by 6.1k
13
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2
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8.2k
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Should the reads of biological replicates be combined for ChIP-seq peak calling?
ChIP-Seq replicates
updated 3.1 years ago by 44k • written 10.4 years ago by 6.1k
1
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0
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3.0k
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Answer: Answer: How to filter chip-seq results?
updated 3.1 years ago by 44k • written 10.4 years ago by 6.1k
1
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1
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1.8k
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Answer: A: chipseq over various genomic locations
10.5 years ago by Ian 6.1k
0
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0
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25k
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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
10.6 years ago by Ian 6.1k
2
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2
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8.3k
views
Best way to map paired-end, uniquely mapped reads with Bowtie2?
ChIP-Seq bowtie paired-end
updated 3.2 years ago by 44k • written 10.6 years ago by 6.1k
0
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0
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8.3k
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Answer: A: Best way to map paired-end, uniquely mapped reads with Bowtie2?
10.6 years ago by Ian 6.1k
18
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7
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12k
views
How To Plot Read Coverage Over Many Different Genomic Regions?
coverage chip-seq
updated 10.7 years ago by ★ 2.0k • written 11.8 years ago by 6.1k
17
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8
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7.8k
views
6 follow
How To Plot/Visualise Tfbs Positions Relative To Tss For Thousands Of Genes?
visualization transcription binding
updated 10.7 years ago by ▴ 40 • written 12.7 years ago by 6.1k
8
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5
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4.3k
views
How To Combine Solid Ngs Reads From Technical Replicates
solid replicates
updated 10.7 years ago by 20 • written 14.1 years ago by 6.1k
0
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0
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3.8k
views
Problem Using Gencode Gene Annotation Gtf With Tophat And Discrepancy Between Ucsc/Gencode Gtfs
tophat gtf ucsc
updated 2.8 years ago by 44k • written 10.8 years ago by 6.1k
11
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9
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9.5k
views
6 follow
Ion Torrent Mapping
ion-torrent mapping
updated 10.8 years ago by 20 • written 12.6 years ago by 6.1k
0
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0
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15k
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Comment: C: Sam To Bam - Loss Of Data Or Just Great Compression?
10.8 years ago by Ian 6.1k
4
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3
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3.2k
views
Tool: Pybamview
python bam
updated 17 months ago by 44k • written 10.8 years ago by 6.1k
1
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1
reply
3.6k
views
Answer: A: Chip Sequencing For A Tiny Genome
10.8 years ago by Ian 6.1k
1
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0
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13k
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Comment: C: Why Does The Base Quality Drop Towards The End For Illumina Reads ?
10.8 years ago by Ian 6.1k
5
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1
reply
4.9k
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Answer: A: Are There Any Tools For Finding Methylation Status Of Promoter Region?
10.8 years ago by Ian 6.1k
2
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0
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12k
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Answer: A: How To Understand The Encoding And Trim Their Adapters
10.9 years ago by Ian 6.1k
1
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2
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3.0k
views
Is It Possible To Manually Reorder Steps In A Galaxy Workflow Summary?
galaxy workflow
updated 10.9 years ago by 20 • written 11.7 years ago by 6.1k
1
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0
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5.9k
views
Answer: A: How To Create A Fixed Step Wig File From A Bam File?
11.0 years ago by Ian 6.1k
1
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0
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3.5k
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Answer: A: Viewing Chip-Chip Data Within A Genome Browser
11.0 years ago by Ian 6.1k
0
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0
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8.8k
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Answer: A: Looking For Good Books On Genomics
11.1 years ago by Ian 6.1k
0
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0
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3.1k
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Answer: A: Does Anyone Know Of A Comprehensive List Of Bioinformatics Tools That Is Kept Ve
11.1 years ago by Ian 6.1k
1
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0
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5.3k
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Comment: C: Macs Peaks Caveat ?
11.1 years ago by Ian 6.1k
0
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0
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5.0k
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Answer: A: Meme And Meme-Chip For Large Datasets
11.1 years ago by Ian 6.1k
2
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2
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4.7k
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Answer: A: How To Get ~ 100% Conserved Genomic Regions Between Human (Hg19) And Mouse(Mm10
11.1 years ago by Ian 6.1k
0
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0
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15k
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Answer: A: Plotting Reads Around Tss
11.1 years ago by Ian 6.1k
1
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1
reply
31k
views
Answer: A: So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
11.1 years ago by Ian 6.1k
1
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1
reply
3.6k
views
Answer: A: How To Display Eight Samples As Ucsc Custom Tracks
11.1 years ago by Ian 6.1k
467 results • Page 5 of 10
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