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1
vote
2
replies
870
views
3 questions about module membership vs gene significance
WGCNA
updated 9 months ago by ★ 28k • written 3.4 years ago by ▴ 110
18
votes
9
replies
13k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 11 months ago by 44k • written 4.3 years ago by ▴ 110
0
votes
0
replies
745
views
Comment: Comment: featurecounts not working on mirbase annotation file
17 months ago by demoraesdiogo2017 ▴ 110
0
votes
2
replies
745
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
17 months ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
649
views
Comment: Comment: No counts in my RNA-seq data
21 months ago by demoraesdiogo2017 ▴ 110
1
vote
2
replies
649
views
No counts in my RNA-seq data
sRNA e.coli
21 months ago by demoraesdiogo2017 ▴ 110
3
votes
2
replies
699
views
carp reads in my bacterial small RNome
rna-seq
updated 21 months ago by 7.0k • written 21 months ago by ▴ 110
0
votes
0
replies
962
views
Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
22 months ago by demoraesdiogo2017 ▴ 110
3
votes
3
replies
962
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
22 months ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
444
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
22 months ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
969
views
Comment: Comment: more than one sample in the same fasta file
22 months ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
969
views
Comment: Comment: more than one sample in the same fasta file
22 months ago by demoraesdiogo2017 ▴ 110
1
vote
5
replies
969
views
more than one sample in the same fasta file
mirnaseq usegalaxy
22 months ago by demoraesdiogo2017 ▴ 110
3
votes
2
replies
1.2k
views
Relative log expression normalization without negative values
rna-seq
updated 2.3 years ago by 85k • written 2.3 years ago by ▴ 110
2
votes
3
replies
1.9k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 2.4 years ago by 85k • written 2.4 years ago by ▴ 110
0
votes
1
reply
844
views
Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
2.4 years ago by demoraesdiogo2017 ▴ 110
0
votes
3
replies
844
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 110
4
votes
5
replies
2.1k
views
how to tell if data was log transformed
UPLC
updated 2.8 years ago by ★ 28k • written 2.8 years ago by ▴ 110
0
votes
0
replies
2.1k
views
Comment: Comment: how to tell if data was log transformed
2.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
395
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
2.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
1.8k
views
Comment: Comment: WGCNA for RNA-SEQ DATA
3.4 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
726
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
3.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
932
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
3.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
932
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
3.5 years ago by demoraesdiogo2017 ▴ 110
2
votes
4
replies
932
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
3.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
1.3k
views
Comment: Comment: WGCNA module network interpretation
3.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
4.9k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
3.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
4.9k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
3.5 years ago by demoraesdiogo2017 ▴ 110
2
votes
2
replies
1.3k
views
WGCNA module network interpretation
network WGCNA
3.5 years ago by demoraesdiogo2017 ▴ 110
5
votes
9
replies
11k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 3.2 years ago by 8.9k • written 5.0 years ago by ▴ 110
1
vote
1
reply
879
views
gene expression x phenotype correlation
RNA-Seq
updated 3.7 years ago by ★ 7.7k • written 3.7 years ago by ▴ 110
0
votes
1
reply
831
views
Comment: C: two samples with 0% alignment
3.8 years ago by demoraesdiogo2017 ▴ 110
1
vote
3
replies
831
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
3.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
697
views
Comment: C: anyway to save contaminated samples?
3.8 years ago by demoraesdiogo2017 ▴ 110
2
votes
5
replies
697
views
anyway to save contaminated samples?
RNA-Seq
3.8 years ago by demoraesdiogo2017 ▴ 110
2
votes
2
replies
805
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
3.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
571
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
3.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
578
views
clusters with no enrichment?
RNA-Seq
3.9 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
937
views
Seurat merge differing number of rows
seurat
updated 3.9 years ago by 20 • written 3.9 years ago by ▴ 110
0
votes
0
replies
20k
views
Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
4.1 years ago by demoraesdiogo2017 ▴ 110
0
votes
2
replies
22k
views
Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
4.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
13k
views
Comment: C: correct way of analyzing cell proportions in singlecell data
4.3 years ago by demoraesdiogo2017 ▴ 110
1
vote
6
replies
8.4k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
4.3 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
8.4k
views
Comment: C: subscript out of bounds in seurat expression matrix
4.3 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
8.4k
views
Comment: C: subscript out of bounds in seurat expression matrix
4.3 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
8.4k
views
Comment: C: subscript out of bounds in seurat expression matrix
4.3 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
2.3k
views
Comment: C: Merge enrichement analysis results
4.4 years ago by demoraesdiogo2017 ▴ 110
2
votes
1
reply
4.7k
views
Answer: A: Heatmap from the RNAseq raw count data
4.4 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
588
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
4.4 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
2.3k
views
Answer: A: Merge enrichement analysis results
4.4 years ago by demoraesdiogo2017 ▴ 110
77 results • Page 1 of 2
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