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1.6k
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Comment: Comment: How to call CNV without normal samples
6 weeks ago by garcesj ▴ 50
0
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0
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39k
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Comment: Comment: Generating consensus sequence from bam file
9 weeks ago by garcesj ▴ 50
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0
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525
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Comment: Comment: Mutation counts corrected by number of samples
5 months ago by garcesj ▴ 50
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1
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525
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Comment: Comment: Mutation counts corrected by number of samples
5 months ago by garcesj ▴ 50
0
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4
replies
525
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Mutation counts corrected by number of samples
mutations WES genomics WGS
5 months ago by garcesj ▴ 50
0
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0
replies
428
views
How to create a haplotype map?
picard haplotype CrosscheckFingerprints
updated 17 months ago by 44k • written 17 months ago by ▴ 50
3
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6
replies
2.3k
views
Mutect2 is not detecting all available cores (multithreading)
exomes parallelization mutect2
updated 9 months ago by ▴ 10 • written 23 months ago by ▴ 50
3
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1
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2.3k
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Answer: Answer: Mutect2 is not detecting all available cores (multithreading)
22 months ago by garcesj ▴ 50
0
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1
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2.3k
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Comment: Comment: Mutect2 is not detecting all available cores (multithreading)
22 months ago by garcesj ▴ 50
1
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3
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1.4k
views
BCL compression
compression demultiplexing illumina BCL
updated 2.1 years ago by 101k • written 2.1 years ago by ▴ 50
0
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1
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1.7k
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Comment: Comment: Low mapping rate due to rRNA
2.5 years ago by garcesj ▴ 50
4
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6
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1.7k
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Low mapping rate due to rRNA
RNA-seq rRNA STAR
updated 2.5 years ago by ★ 1.8k • written 2.5 years ago by ▴ 50
0
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0
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1.7k
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Comment: Comment: Low mapping rate due to rRNA
2.5 years ago by garcesj ▴ 50
0
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0
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1.0k
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Comment: Comment: Combine full-length and 3` RNAseq, is it possible?
2.7 years ago by garcesj ▴ 50
0
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0
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668
views
Comment: Comment: Study of similarity (contrary to differential expression analysis)
2.7 years ago by garcesj ▴ 50
2
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2
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668
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Study of similarity (contrary to differential expression analysis)
RNAseq expression analysis differential correlation
2.7 years ago by garcesj ▴ 50
3
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4
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1.0k
views
Combine full-length and 3` RNAseq, is it possible?
ExperimentalDesign RNAseq
2.7 years ago by garcesj ▴ 50
0
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5
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2.2k
views
Weird volcano plot
RNA-Seq volcano
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 50
0
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0
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2.2k
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Comment: C: Weird volcano plot
4.0 years ago by garcesj ▴ 50
0
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1
reply
2.2k
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Comment: C: Weird volcano plot
4.0 years ago by garcesj ▴ 50
0
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0
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4.0k
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Answer: A: clusterProfiler::enrichGO() is getting very slow
4.4 years ago by garcesj ▴ 50
0
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0
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3.1k
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Comment: C: Weird MA-plot (DESeq2)
4.6 years ago by garcesj ▴ 50
1
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1
reply
3.1k
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Comment: C: Weird MA-plot (DESeq2)
4.6 years ago by garcesj ▴ 50
3
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7
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3.1k
views
Weird MA-plot (DESeq2)
RNA-Seq DESeq2 confounders
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 50
0
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1
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3.1k
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Comment: C: Weird MA-plot (DESeq2)
4.6 years ago by garcesj ▴ 50
1
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2
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953
views
Multiple N bases in RNAseq
RNA-Seq Illumina
4.8 years ago by garcesj ▴ 50
0
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0
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953
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Comment: C: Multiple N bases in RNAseq
4.8 years ago by garcesj ▴ 50
0
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0
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5.4k
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Comment: C: PyClone without copy number data
5.4 years ago by garcesj ▴ 50
0
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0
replies
685
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Activator o repressor protein in a pathway
pathway
5.4 years ago by garcesj ▴ 50
1
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1
reply
1.6k
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Comment: C: GISTIC2, some missing samples during the process
5.5 years ago by garcesj ▴ 50
2
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3
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1.6k
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GISTIC2, some missing samples during the process
gistic2
5.5 years ago by garcesj ▴ 50
0
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0
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1.5k
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Answer: A: Rawcopy copy number analysis
5.7 years ago by garcesj ▴ 50
0
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1
reply
2.3k
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Comment: C: CDF file for Cytoscan arrays
5.7 years ago by garcesj ▴ 50
0
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3
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2.3k
views
CDF file for Cytoscan arrays
array Cystoscan CDF
5.7 years ago by garcesj ▴ 50
0
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0
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2.8k
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Comment: C: cdf environment for cytoscan hd array
5.8 years ago by garcesj ▴ 50
0
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0
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2.7k
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Comment: C: How to find CNV or CN state information from rawcopy output ?
5.8 years ago by garcesj ▴ 50
0
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1
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4.0k
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Comment: C: High Kmer Content in middle of the read
6.1 years ago by garcesj ▴ 50
0
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1
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4.0k
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Answer: A: High Kmer Content in middle of the read
6.1 years ago by garcesj ▴ 50
0
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0
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4.4k
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Answer: A: Varscan2 copynumber 'Parsing Exception' error
6.1 years ago by garcesj ▴ 50
0
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0
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5.8k
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Comment: C: Why different tSNE plot with Seurat and Monocle if they'r using the same R packa
6.4 years ago by garcesj ▴ 50
2
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3
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5.8k
views
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell tsne R Seurat monocle
updated 6.4 years ago by ▴ 110 • written 6.4 years ago by ▴ 50
0
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2
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3.4k
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Comment: C: Create a custom exome .genome for IGV
6.7 years ago by garcesj ▴ 50
0
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1
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3.4k
views
Comment: C: Create a custom exome .genome for IGV
6.7 years ago by garcesj ▴ 50
0
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8
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3.4k
views
Create a custom exome .genome for IGV
IGV exome sequencing WES
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 50
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