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203
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Paired snATACseq and snRNAseq over multiple tissues - best approaches
Signac
ArchR
Seurat
ATACseq
5 months ago by
matt.a.bennett25890
▴ 30
1
vote
0
replies
594
views
Answer:
Answer: Basic question about lncRNA identification
5 months ago by
matt.a.bennett25890
▴ 30
0
votes
1
reply
391
views
Capped expression values in single cell RNAseq (Tabula Sapiens/scanpy/CellXGene)
scanpy
cellxgene
scRNA-seq
10x
normalisation
8 months ago by
matt.a.bennett25890
▴ 30
0
votes
0
replies
391
views
Answer:
Answer: Tabula Sapiens and scanpy normalised expression data
8 months ago by
matt.a.bennett25890
▴ 30
2
votes
0
replies
337
views
Answer:
Answer: RNA-seq scaling the data for heatmap
8 months ago by
matt.a.bennett25890
▴ 30
0
votes
0
replies
799
views
Comment:
Comment: 10x scRNAseq samples with similar reads/cell but vastly differing UMI/cell
2.2 years ago by
matt.a.bennett25890
▴ 30
0
votes
2
replies
799
views
10x scRNAseq samples with similar reads/cell but vastly differing UMI/cell
10x
scRNAseq
UMI
QC
2.2 years ago by
matt.a.bennett25890
▴ 30
0
votes
0
replies
1.4k
views
Comment:
C: How to evaluate gene expression
4.0 years ago by
matt.a.bennett25890
▴ 30
0
votes
1
reply
1.4k
views
Answer:
A: How to evaluate gene expression
4.0 years ago by
matt.a.bennett25890
▴ 30
0
votes
0
replies
742
views
Retrieving CREs from ENCODE III SCREEN server
SCREEN
CRE
ChIPseq
ENCODE
4.0 years ago by
matt.a.bennett25890
▴ 30
0
votes
2
replies
1.0k
views
Answer:
A: long non coding RNAs annotation file
4.8 years ago by
matt.a.bennett25890
▴ 30
0
votes
0
replies
813
views
Comment:
C: Novel transcripts from monoculture RNAseq applied to tissue-level RNAseq
4.8 years ago by
matt.a.bennett25890
▴ 30
1
vote
2
replies
813
views
Novel transcripts from monoculture RNAseq applied to tissue-level RNAseq
RNA-Seq
transcript discovery
updated 4.8 years ago by
benformatics
4.0k • written 4.8 years ago by
matt.a.bennett25890
▴ 30
2
votes
1
reply
2.5k
views
GOseq Probability Weight Function Interpretation and Use
goseq
RNA-Seq
gene ontology
updated 6.4 years ago by
i.sudbery
20k • written 6.7 years ago by
matt.a.bennett25890
▴ 30
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