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103
votes
27
replies
95k
views
21 follow
Extract Sub-Set Of Regions From Vcf File
vcf tabix genome filter
updated 21 months ago by • 0 • written 12.7 years ago by ▴ 850
60
votes
36
replies
43k
views
27 follow
Pca From Vcf Files
pca genome vcf
updated 2.5 years ago by ▴ 50 • written 12.8 years ago by ▴ 850
5
votes
6
replies
4.6k
views
6 follow
Split Vcf File Using Gatk
genome gatk vcf parsing
updated 2.8 years ago by • 0 • written 12.7 years ago by ▴ 850
13
votes
13
replies
15k
views
6 follow
Comparing And Plotting Coverage Between Two Bam Files
bam coverage genome chromosome
updated 5.8 years ago by • 0 • written 12.7 years ago by ▴ 850
7
votes
10
replies
3.5k
views
Confirming Structural Variants In The Genome
genome coverage
updated 6.5 years ago by 20 • written 12.6 years ago by ▴ 850
8
votes
4
replies
6.2k
views
Retrieve Ensembl Gene Ids From List Of Regions Using Hg18 Annotation
genome search genes
updated 7.2 years ago by 20 • written 12.4 years ago by ▴ 850
5
votes
10
replies
8.3k
views
7 follow
Vcftools Runs Of Homozygosity Option
vcf
updated 2.7 years ago by 44k • written 12.9 years ago by ▴ 850
3
votes
7
replies
4.6k
views
Finding Information About Hypothetical Genes
gene function genome sequence
updated 8.9 years ago by 20 • written 12.7 years ago by ▴ 850
44
votes
13
replies
28k
views
9 follow
What Are These Rp11 'Genes' In The Genome?
ensembl gene annotation genome
updated 2.3 years ago by 44k • written 12.5 years ago by ▴ 850
17
votes
10
replies
17k
views
7 follow
How To Get Phasing Status From Vcf Files
vcf haplotype genome
updated 3.0 years ago by 44k • written 12.6 years ago by ▴ 850
5
votes
2
replies
2.5k
views
Getting Conservation Scores For Specific Sites
genome vcf conservation function prediction
updated 10.4 years ago by 20 • written 12.8 years ago by ▴ 850
6
votes
3
replies
3.6k
views
Most Appropriate Software Detect Population Specific Structural Variation In Multiple Low-Coverage Genomes?
copynumber
updated 10.8 years ago by 20 • written 11.5 years ago by ▴ 850
22
votes
7
replies
15k
views
How To Perform A Fst (Fixation Index) Calculation Over A Vcf File Using A Sliding Window?
vcf vcftools
updated 10.9 years ago by 20 • written 11.7 years ago by ▴ 850
0
votes
1
reply
4.9k
views
Comment: C: Functional Relevance Of Stop Retained Variants?
10.9 years ago by Rubal7 ▴ 850
2
votes
3
replies
4.9k
views
Functional Relevance Of Stop Retained Variants?
functional disease variation genome genomics
updated 10.9 years ago by 24k • written 10.9 years ago by ▴ 850
4
votes
4
replies
3.2k
views
Simulation Negative Selection
selection genome
updated 10.9 years ago by 20 • written 12.8 years ago by ▴ 850
3
votes
1
reply
3.5k
views
How To Identify If Gene Overlaps Between Studies Are Significant?
overlap gene
updated 10.9 years ago by 102k • written 10.9 years ago by ▴ 850
1
vote
0
replies
16k
views
Answer: A: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
10.9 years ago by Rubal7 ▴ 850
0
votes
0
replies
43k
views
Comment: C: Pca From Vcf Files
10.9 years ago by Rubal7 ▴ 850
3
votes
5
replies
2.6k
views
Automated Submission Of Jobs To Ensembl Biomart
ensembl biomart genome
updated 11.3 years ago by 20 • written 12.5 years ago by ▴ 850
0
votes
1
reply
3.6k
views
Comment: C: Most Appropriate Software Detect Population Specific Structural Variation In Mul
11.5 years ago by Rubal7 ▴ 850
6
votes
3
replies
15k
views
Vcftools Weir-Fst-Pop
vcf vcftools genome fst
updated 11.6 years ago by 20 • written 12.7 years ago by ▴ 850
0
votes
1
reply
17k
views
Comment: C: R: Manhattan Plot Of Fst Values Instead Of -Log(P)
11.7 years ago by Rubal7 ▴ 850
0
votes
0
replies
15k
views
Comment: C: How To Perform A Fst (Fixation Index) Calculation Over A Vcf File Using A Slidin
11.7 years ago by Rubal7 ▴ 850
1
vote
0
replies
5.3k
views
Comment: C: Filtering Vcf File For Fixed Substitutions
12.1 years ago by Rubal7 ▴ 850
8
votes
3
replies
5.3k
views
Filtering Vcf File For Fixed Substitutions
vcf filter allele frequency
updated 12.1 years ago by ★ 1.0k • written 12.1 years ago by ▴ 850
0
votes
0
replies
3.1k
views
Comment: C: Getting Transcipt Variants For Specific Genes In Rna-Seq Data
12.3 years ago by Rubal7 ▴ 850
2
votes
5
replies
3.1k
views
Getting Transcipt Variants For Specific Genes In Rna-Seq Data
rna transcript sequence
updated 12.3 years ago by 13k • written 12.3 years ago by ▴ 850
0
votes
1
reply
5.1k
views
Comment: C: How To Look For Enrichment Of Gwas Snps In List Of Regions
12.4 years ago by Rubal7 ▴ 850
0
votes
1
reply
14k
views
Answer: A: How To Get Consensus Sequence Including Variant From A Vcf File For Several Indi
12.4 years ago by Rubal7 ▴ 850
3
votes
4
replies
5.1k
views
How To Look For Enrichment Of Gwas Snps In List Of Regions
gwas enrichment genome
updated 12.4 years ago by 18k • written 12.4 years ago by ▴ 850
0
votes
0
replies
6.2k
views
Comment: C: Retrieve Ensembl Gene Ids From List Of Regions Using Hg18 Annotation
12.4 years ago by Rubal7 ▴ 850
0
votes
0
replies
6.2k
views
Comment: C: Retrieve Ensembl Gene Ids From List Of Regions Using Hg18 Annotation
12.4 years ago by Rubal7 ▴ 850
0
votes
0
replies
28k
views
Comment: C: What Are These Rp11 'Genes' In The Genome?
12.5 years ago by Rubal7 ▴ 850
0
votes
0
replies
28k
views
Comment: C: What Are These Rp11 'Genes' In The Genome?
12.5 years ago by Rubal7 ▴ 850
0
votes
0
replies
2.6k
views
Comment: C: Automated Submission Of Jobs To Ensembl Biomart
12.5 years ago by Rubal7 ▴ 850
0
votes
1
reply
2.6k
views
Comment: C: Automated Submission Of Jobs To Ensembl Biomart
12.5 years ago by Rubal7 ▴ 850
0
votes
1
reply
17k
views
Comment: C: How To Get Phasing Status From Vcf Files
12.6 years ago by Rubal7 ▴ 850
0
votes
0
replies
4.6k
views
Comment: C: Finding Information About Hypothetical Genes
12.6 years ago by Rubal7 ▴ 850
0
votes
0
replies
3.5k
views
Comment: C: Confirming Structural Variants In The Genome
12.6 years ago by Rubal7 ▴ 850
0
votes
2
replies
3.5k
views
Comment: C: Confirming Structural Variants In The Genome
12.6 years ago by Rubal7 ▴ 850
0
votes
0
replies
4.5k
views
Comment: C: Conservation At Amino Acid Level
12.6 years ago by Rubal7 ▴ 850
0
votes
1
reply
3.5k
views
Answer: A: Confirming Structural Variants In The Genome
12.6 years ago by Rubal7 ▴ 850
0
votes
0
replies
4.6k
views
Comment: C: Finding Information About Hypothetical Genes
12.7 years ago by Rubal7 ▴ 850
0
votes
1
reply
4.6k
views
Comment: C: Iterating With Vcf Tools
12.7 years ago by Rubal7 ▴ 850
8
votes
4
replies
4.6k
views
Iterating With Vcf Tools
vcf genome
updated 12.7 years ago by 36k • written 12.7 years ago by ▴ 850
0
votes
0
replies
15k
views
Comment: C: Retrieve Subset Positions Vcf File
12.7 years ago by Rubal7 ▴ 850
14
votes
10
replies
15k
views
6 follow
Retrieve Subset Positions Vcf File
vcf tabix
updated 3.0 years ago by 44k • written 12.7 years ago by ▴ 850
0
votes
1
reply
7.2k
views
Comment: C: Any R Package To Calculate “Mutation Rates/Mismatches”?
12.7 years ago by Rubal7 ▴ 850
0
votes
0
replies
15k
views
Comment: C: Vcftools Weir-Fst-Pop
12.7 years ago by Rubal7 ▴ 850
73 results • Page 1 of 2
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