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0
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1
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2.4k
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Comment: Comment: Rstudio server in Snakemake
23 months ago by camerond ▴ 190
0
votes
0
replies
1.8k
views
Comment: Comment: creating conda environment from snakemake rule
24 months ago by camerond ▴ 190
0
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1
reply
1.8k
views
Comment: Comment: creating conda environment from snakemake rule
24 months ago by camerond ▴ 190
0
votes
0
replies
1.8k
views
Comment: Comment: creating conda environment from snakemake rule
24 months ago by camerond ▴ 190
0
votes
1
reply
1.8k
views
Comment: Comment: creating conda environment from snakemake rule
24 months ago by camerond ▴ 190
0
votes
0
replies
547
views
Get SNPs with MAF 0.05 for all genes - attempt with BiomaRt
BiomaRt SNPs MAF genes
2.6 years ago by camerond ▴ 190
0
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0
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2.1k
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Comment: Comment: Problem with snakefile.
4.1 years ago by camerond ▴ 190
0
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0
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2.1k
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Comment: Comment: Problem with snakefile.
4.1 years ago by camerond ▴ 190
1
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2
replies
2.1k
views
Answer: Answer: Problem with snakefile.
4.1 years ago by camerond ▴ 190
1
vote
0
replies
14k
views
Comment: C: cellranger count help
4.3 years ago by camerond ▴ 190
0
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0
replies
3.8k
views
Comment: C: Seurat - label cells in cluster plot by transcripts per cell
4.6 years ago by camerond ▴ 190
2
votes
2
replies
3.8k
views
Seurat - label cells in cluster plot by transcripts per cell
Seurat RNA-Seq single-cell cluster labelling
updated 4.6 years ago by 13k • written 4.6 years ago by ▴ 190
0
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0
replies
5.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
5.0 years ago by camerond ▴ 190
0
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0
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5.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
5.0 years ago by camerond ▴ 190
0
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1
reply
5.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
5.0 years ago by camerond ▴ 190
5
votes
10
replies
5.0k
views
Snakemake - moving, re-naming, unzipping and merging files for downstream analysis
snakemake merging fastq python
5.0 years ago by camerond ▴ 190
0
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1
reply
5.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
5.0 years ago by camerond ▴ 190
0
votes
1
reply
5.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
5.0 years ago by camerond ▴ 190
2
votes
4
replies
4.9k
views
Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 files
bed bedtools
updated 2.2 years ago by 45k • written 5.6 years ago by ▴ 190
0
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0
replies
2.2k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
5.3 years ago by camerond ▴ 190
0
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0
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2.2k
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Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
5.3 years ago by camerond ▴ 190
6
votes
8
replies
2.2k
views
Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-seq sequencing run
single cell RNA-seq 10X sequencing
5.3 years ago by camerond ▴ 190
0
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1
reply
2.2k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
5.3 years ago by camerond ▴ 190
0
votes
1
reply
2.2k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
5.3 years ago by camerond ▴ 190
0
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0
replies
4.6k
views
Comment: C: Snakemake: Force execution of rules in a specific order - ignoring wildcards
5.3 years ago by camerond ▴ 190
4
votes
2
replies
4.6k
views
Snakemake: Force execution of rules in a specific order - ignoring wildcards
snakemake python rule execution
updated 5.3 years ago by ★ 2.2k • written 5.3 years ago by ▴ 190
0
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0
replies
4.9k
views
Answer: A: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
5.6 years ago by camerond ▴ 190
0
votes
0
replies
4.9k
views
Comment: C: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
5.6 years ago by camerond ▴ 190
0
votes
0
replies
1.4k
views
One tool for get genome co-ordinates from rsIDs GWAS sumstats files, then liftOver from hg18 to hg19?
liftover GWAS sumstats linux SNP
6.0 years ago by camerond ▴ 190
0
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1
reply
2.5k
views
Comment: C: Appropriate use of wildcards for single instances in Snakemake
6.1 years ago by camerond ▴ 190
2
votes
3
replies
2.5k
views
Appropriate use of wildcards for single instances in Snakemake
Snakemake wildcards Garfield
updated 6.1 years ago by 23k • written 6.1 years ago by ▴ 190
1
vote
0
replies
1.3k
views
Comment: C: Extract and retain only chromosome info in GWAS sumstats file
6.1 years ago by camerond ▴ 190
6
votes
3
replies
1.3k
views
Extract and retain only chromosome info in GWAS sumstats file
bash GWAS sumstats awk sed munging
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 190
3
votes
1
reply
3.1k
views
Answer: A: Snakemake logging error
6.1 years ago by camerond ▴ 190
4
votes
2
replies
3.1k
views
Snakemake logging error
snakemake log
6.1 years ago by camerond ▴ 190
0
votes
1
reply
2.5k
views
Comment: C: Issue running deeptools on cluster via snakemake
6.1 years ago by camerond ▴ 190
0
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0
replies
2.5k
views
Comment: C: Issue running deeptools on cluster via snakemake
6.1 years ago by camerond ▴ 190
5
votes
5
replies
2.5k
views
Issue running deeptools on cluster via snakemake
Deeptools Snakemake
updated 6.1 years ago by 5.8k • written 6.1 years ago by ▴ 190
0
votes
0
replies
5.6k
views
Comment: C: Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over usin
6.2 years ago by camerond ▴ 190
1
vote
2
replies
5.6k
views
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over rtracklayer GRanges bigwig
updated 6.2 years ago by 4.1k • written 6.2 years ago by ▴ 190
21
votes
15
replies
11k
views
8 follow
Obtaining rsIDs using BiomaRt or linux
R Biomart rsID SNPs bed
updated 3.3 years ago by ▴ 10 • written 7.0 years ago by ▴ 190
1
vote
0
replies
11k
views
Comment: C: Obtaining rsIDs using BiomaRt or linux
7.0 years ago by camerond ▴ 190
1
vote
0
replies
12k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
7.2 years ago by camerond ▴ 190
0
votes
1
reply
12k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
7.2 years ago by camerond ▴ 190
0
votes
1
reply
12k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
7.2 years ago by camerond ▴ 190
0
votes
2
replies
12k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
7.2 years ago by camerond ▴ 190
12
votes
22
replies
12k
views
Get rsID for a list of SNPs in an entire GWAS sumstats file
next-gen sequencing GWAS sumstats
updated 3.8 years ago by ▴ 40 • written 7.2 years ago by ▴ 190
0
votes
0
replies
12k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
7.2 years ago by camerond ▴ 190
1
vote
0
replies
28k
views
Comment: C: Extract ONLY chromosomes 1-22 from bam file - removing extraneous chr annotation
7.3 years ago by camerond ▴ 190
16
votes
6
replies
28k
views
Extract ONLY chromosomes 1-22 from bam file - removing extraneous chr annotations
genome next-gen sequencing bam file filtering
updated 7.3 years ago by 166k • written 7.3 years ago by ▴ 190
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