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Comment: C: Getting huge size of CNV region from CNV-kit with hybrid data.
4.3 years ago by Makplus T ▴ 100
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2
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1.0k
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Getting huge size of CNV region from CNV-kit with hybrid data.
CNV WES CNVkit
4.3 years ago by Makplus T ▴ 100
6
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6
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3.2k
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How to explain that mutations called by Mutect2 are inconsistent with what I saw in iGV?
iGV GATK Mutect2 mutation
updated 4.3 years ago by ▴ 40 • written 4.4 years ago by ▴ 100
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5.0k
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Comment: C: Confused about the AF tag in VCF from samtools/bcftools mpileup
4.4 years ago by Makplus T ▴ 100
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0
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5.0k
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Comment: C: Confused about the AF tag in VCF from samtools/bcftools mpileup
4.4 years ago by Makplus T ▴ 100
4
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4
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5.0k
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Confused about the AF tag in VCF from samtools/bcftools mpileup
variants AF VCF samtools GATK
updated 4.4 years ago by ★ 2.2k • written 4.4 years ago by ▴ 100
0
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1
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3.2k
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Comment: C: How to explain that mutations called by Mutect2 are inconsistent with what I saw
4.4 years ago by Makplus T ▴ 100
3
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5
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6.6k
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Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl website, how to deal with it?
org.Hs.eg.db ensembl gene symbol
updated 4.6 years ago by • 0 • written 6.7 years ago by ▴ 100
0
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0
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879
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Comment: C: will C-base re-synthesize during PCR in Bisulfite methylation sequence
5.1 years ago by Makplus T ▴ 100
0
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1
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879
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Comment: C: will C-base re-synthesize during PCR in Bisulfite methylation sequence
5.1 years ago by Makplus T ▴ 100
0
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4
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879
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will C-base re-synthesize during PCR in Bisulfite methylation sequence
bisulfite methylation
5.1 years ago by Makplus T ▴ 100
2
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0
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4.6k
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Answer: A: Volcano plot: why is there big FC with big p-values?
5.1 years ago by Makplus T ▴ 100
2
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0
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4.9k
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Answer: A: Determine adapter sequence in RNA-seq samples
5.1 years ago by Makplus T ▴ 100
0
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2
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1.2k
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Why DP and GT info in my VCF file are inconsistent?
GATK VCF format
updated 5.2 years ago by 20 • written 5.2 years ago by ▴ 100
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0
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1.2k
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Comment: C: Why DP and GT info in my VCF file are inconsistent?
5.2 years ago by Makplus T ▴ 100
0
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0
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1.4k
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What is the different if I call germline SNP/Indel with mutect and HaplotypeCaller?
GATK mutect HaplotypeCaller.
5.3 years ago by Makplus T ▴ 100
1
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0
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40k
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Comment: C: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
5.5 years ago by Makplus T ▴ 100
0
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1
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2.0k
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Comment: C: Are there any way to find DMR with the data in TCGA methylation level3?
6.1 years ago by Makplus T ▴ 100
0
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4
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2.0k
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Are there any way to find DMR with the data in TCGA methylation level3?
TCGA Methylation 450K DMR
updated 6.1 years ago by 88k • written 6.2 years ago by ▴ 100
6
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1
reply
12k
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should FASTA files be sorted before indexed with SAMtools?
SAMtools FASTA sort index
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 100
1
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1
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6.6k
views
Comment: C: Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl websit
6.7 years ago by Makplus T ▴ 100
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