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Comment: Comment: Quick way to find the nearest genes
2.7 years ago by chipolino ▴ 150
1
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2
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943
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Quick way to find the nearest genes
genes bed genome enhancers
2.7 years ago by chipolino ▴ 150
1
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2
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1.1k
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Given set of genomic sequences find potentially enriched genes?
enrichment genes mouse
updated 3.1 years ago by 7.6k • written 3.1 years ago by ▴ 150
2
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2
replies
2.0k
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During RNA-seq analysis a lot of pseudogenes come up as DE
RNA-Seq pseudogene
3.9 years ago by chipolino ▴ 150
22
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2
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22k
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mitochondrial/ribosomal protein genes in scRNA-seq analysis
scRNA-seq RNA-Seq Data processing
updated 4.3 years ago by ★ 18k • written 5.9 years ago by ▴ 150
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0
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830
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What should I provide as input for Tomtom: PPMs or PWMs?
motif tomtom meme
5.0 years ago by chipolino ▴ 150
2
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1
reply
1.2k
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Upstream regulators of a gene/protein
TF Regulation Target
updated 5.3 years ago by ▴ 710 • written 5.3 years ago by ▴ 150
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1
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2.1k
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Comment: C: scATAC-seq analysis, data preprocessing
5.5 years ago by chipolino ▴ 150
2
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8
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2.1k
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scATAC-seq analysis, data preprocessing
scATAC-seq
updated 5.5 years ago by 12k • written 5.5 years ago by ▴ 150
0
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1
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2.1k
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Comment: C: scATAC-seq analysis, data preprocessing
5.5 years ago by chipolino ▴ 150
5
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1
reply
5.6k
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UMAP interpretation in scRNA-seq analysis
scRNA-seq UMAP Pseudotime
updated 5.6 years ago by 20 • written 5.6 years ago by ▴ 150
1
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0
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3.3k
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Comment: C: Distance for gene expression samples
5.6 years ago by chipolino ▴ 150
0
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1
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3.3k
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Comment: C: Distance for gene expression samples
5.6 years ago by chipolino ▴ 150
5
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7
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3.3k
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Distance for gene expression samples
RNA-Seq distance
updated 5.6 years ago by 88k • written 5.6 years ago by ▴ 150
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1
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3.3k
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Comment: C: Distance for gene expression samples
5.6 years ago by chipolino ▴ 150
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0
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1.4k
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Drug target discovery with single cell RNA-seq
scRNA-seq drug target
updated 5.7 years ago by 20 • written 5.9 years ago by ▴ 150
0
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1
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1.1k
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Chip-seq data of bivalent regions in hESC
stem cells ChIP-Seq hESC
updated 6.0 years ago by 7.6k • written 6.0 years ago by ▴ 150
0
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0
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1.6k
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scRNA-seq, filter low expressed genes based on RPKM value
scRNA-seq expression filtering rpkm
6.1 years ago by chipolino ▴ 150
3
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1
reply
1.8k
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RNA-seq for drug targets
RNA-Seq drug target
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 150
5
votes
5
replies
12k
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GSEA, input metrics
GSEA RNA-Seq
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by ▴ 150
1
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1
reply
2.3k
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Directionality of KEGG/Reactome/Wikipathways
KEGG Reactome pathways wikipathways
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 150
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0
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1.4k
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Transcription factor enrichment analysis
enrichment transcription factor fisher exact test
6.3 years ago by chipolino ▴ 150
4
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3
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1.9k
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Pathway enrichment analysis of gene set
pathway enrichment analysis
updated 6.4 years ago by 7.6k • written 6.4 years ago by ▴ 150
2
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3
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7.1k
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Stringtie output files
RNA-Seq Stringtie GTF
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 150
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0
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2.2k
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Comment: C: Kmer enrichment analysis
6.7 years ago by chipolino ▴ 150
1
vote
2
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2.2k
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Kmer enrichment analysis
genome sequence
6.7 years ago by chipolino ▴ 150
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